Find open-source science resources
A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
Filters
Health
Domain
Language(1)
License
Source(1)
Type
16 of 5,893 resources
Freely available tools for biological computing in Python, with included cookbook, packaging and thorough documentation. Part of the [Open Bioinformatics Foundation](http://open-bio.org/). Contains the very useful [Entrez](https://biopython.org/DIST/docs/api/Bio.Entrez-module.html) package for API access to the NCBI databases.
Utilities for working with CSV/Tab-delimited files.
Access to Biological Web Services from Python.
GFF and GTF file manipulation and interconversion.
Deep learning-based variant caller
FASTQ and SAM quality control using Python.
Batteries included genomic analysis pipeline for variant and RNA-Seq analysis, structural variant calling, annotation, and prediction.
Resources on ChIP-seq data which include papers, methods, links to software, and analysis.
file format conversion in Biopython in a convenient way.
Easily submitting PBS jobs with script template. Multiple input files supported.
Go Get Data; A command line interface for obtaining genomic data.
Computation Pipeline library for python widely used in science and bioinformatics.
Easy-to-use DNA sequence visualization tool that turns FASTA files into browser-based visualizations.
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data.