Scanpy
github.com/scverse/scanpyScalable toolkit for analyzing single-cell gene expression data, including preprocessing, visualization, clustering, and trajectory inference.
Sourced from
- Awesome Bioinformatics — github.com/scverse/scanpy
Related resources
Cython + HTSlib == fast VCF parsing; even faster parsing than pyVCF.
A Python script that converts positional information from a SAM dataset into interval format with 0-based start and 1-based end. CIGAR string of SAM format is used to compute the end coordinate.
Python wrapper for [bedtools](https://github.com/arq5x/bedtools).