pyfaidx
github.com/mdshw5/pyfaidxPythonic access to FASTA files.
Sourced from
- Awesome Bioinformatics — github.com/mdshw5/pyfaidx
Related resources
Cython + HTSlib == fast VCF parsing; even faster parsing than pyVCF.
Python wrapper for [bedtools](https://github.com/arq5x/bedtools).
A port of [pyVCF](https://github.com/jamescasbon/PyVCF) using Cython for speed.
A Python script that converts positional information from a SAM dataset into interval format with 0-based start and 1-based end. CIGAR string of SAM format is used to compute the end coordinate.