Biopython

github.com/biopython/biopython
Active5.1Kupdated 1 month ago
Python
NOASSERTION

Freely available tools for biological computing in Python, with included cookbook, packaging and thorough documentation. Part of the [Open Bioinformatics Foundation](http://open-bio.org/). Contains the very useful [Entrez](https://biopython.org/DIST/docs/api/Bio.Entrez-module.html) package for API access to the NCBI databases.

Sourced from

  • Awesome Bioinformaticsgithub.com/biopython/biopython
  • GitHubgithub.com/biopython/biopython

Related resources

Java framework for processing biological data.

Active6232 months ago
Java
LGPL-2.1

Pythonic access to FASTA files.

Active4863 months ago
Python
NOASSERTION

Deep learning-based variant caller

Active3.7K3 months ago
Python
BSD-3-Clause

Minimap2 is an pairwise aligner for genomic and spliced nucleotide sequences. It can perform the assembly-to-assembly alignment, and works with gzip'd FASTQ, FASTA formats. It also finds overlaps between long-reads.

Active2.2K1 month ago
C
NOASSERTION

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences.

Idle1.7K1 year ago
C
GPL-3.0

Scalable genomic analysis.

Active1.1K3 weeks ago
Python
MIT