CSVKit

Syntax Highlighting for Computational Biology file formats (SAM, VCF, GTF, FASTA, PDB, etc...) in vim/less/gedit/sublime.

Sort genomic files according to a specified order.

Easily submitting PBS jobs with script template. Multiple input files supported.

Fast FASTQ filtering by matching reads against one or more regex patterns.

Write-once-read-many table for large datasets.