bcbio-nextgen
github.com/chapmanb/bcbio-nextgenBatteries included genomic analysis pipeline for variant and RNA-Seq analysis, structural variant calling, annotation, and prediction.
Sourced from
- Awesome Bioinformatics — github.com/chapmanb/bcbio-nextgen
- GitHub — github.com/chapmanb/bcbio-nextgen
Related resources
A flexible pipeline, built with Nextflow, for the complete analysis of bacterial genomes.
A generic but comprehensive bacterial annotation pipeline, built with Nextflow, with nice graphical options for investigating results.
A pipeline for preprocessing short and long sequencing reads, built with Nextflow.
Customizable pipeline for differential expression analysis with an intuitive GUI.