Bacannot

github.com/fmalmeida/bacannot
Idle108updated 9 months ago
Nextflow
GPL-3.0

A generic but comprehensive bacterial annotation pipeline, built with Nextflow, with nice graphical options for investigating results.

Sourced from

  • Awesome Bioinformatics — github.com/fmalmeida/bacannot
  • GitHub — github.com/fmalmeida/bacannot

Related resources

Multi-type data labeling and annotation tool

Active28.4K3 weeks ago
TypeScript
Apache-2.0

Standard data-centric AI package for data quality and machine learning, automatically detecting label errors, outliers, and dataset issues to improve scientific dataset reliability and model performance (11K+ stars, MIT License)

Idle11.7K9 months ago
Python
Apache-2.0

A list of pipeline resources.

Active6.6K1 week ago

Batteries included genomic analysis pipeline for variant and RNA-Seq analysis, structural variant calling, annotation, and prediction.

Stale1K2 years ago
Python
MIT

Prokka: rapid prokaryotic genome annotation. Prokka is one of the most cited annotation command line tools for microbial genome annotations.

Idle9959 months ago
Perl
GPL-3.0

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

Active6802 months ago
Python
GPL-3.0