Find open-source science resources

METEOR is a plateform for quantitative metagenomics profiling of complex

A DNA annotation model from the Carbon family.

OpenOncology is an open-source platform for precision oncology, designed

OpusTaxa is an open-source Snakemake workflow for the end

Processes 96-well plate absorbance data through blank subtraction, regression

Fully open-source (Apache 2.0) biomolecular structure prediction reproducing AlphaFold3

protein representation learning, providing standardized interfaces for pre-training and diverse

Plans geometric serial dilution series for molecular biology and biochemistry

protein entries, plus dilution and ligation calculation modes through one API-backed

Performs laboratory unit conversions across molarity, OD600 cell density, C

Pythonic access to FASTA files.

Blog | Hugging Face Bio | Code

protein binders with RFD4-Proteina entirely on a MacBook: target

RFdiffusion is an open source method for structure generation, with

NovoTax is an end-to-end pipeline designed to identify

Blog | Carbon-X | Carbon-X-Base | Hugging Face Bio | Code

Democratizing AI scientists by transforming any LLM into research systems

scientific tasks including DNA manipulation, literature search, and protein engineering

Comprehensive collection of 125+ ready-to-use scientific skill modules

TransformerEngine-accelerated checkpoints and training recipes for scaling biological foundation

protein binder design with test-time optimization, SOTA on binder

RFantibody is a pipeline for structure-based de novo antibody

197 bioinformatics and life science skills for Claude Code and

Open-source hybrid scientific research agent and workbench replicating Claude

Sequence and structure, designed together.Baker Lab × NVIDIA GenAIR Project page

High-accuracy RAG for scientific PDFs with citation support, agentic

AlphaFast is a framework designed to accelerate the Multiple Sequence

AlloPipe is a bioinformatics tool designed to identify candidate minor

Autonomous ML experimentation for biomedical data.

A System-1 decision model for biomedicine, pharma and clinical

protein design platform via Google Colab integrating AlphaFold2, RoseTTAFold, and ProteinMPNN

protein engineering, and biomolecular design (329+ stars, Apache 2.0 / CC-BY-4.0, 2026)

Neural network-based cryo-EM heterogeneous reconstruction, modeling continuous 3D

protein design using diffusion modeling, equivariant graph neural networks, and conditional

Turn any AI agent into an AI Scientist. The #1

Interaction Fingerprints for protein-ligand complexes and more.

proteins, nucleic acids, small molecules, ions, and post-translational modifications

NVIDIA's open-source platform for building and adapting biological

proteins, nucleic acids, and small molecules in drug discovery; ranked

protein-protein interaction screening with AlphaFold-Multimer and AlphaFold 3, supporting

General-purpose RNA language model with 650M parameters pretrained on

Pythonic Access to the Ensembl database.

protein design framework integrating Boltz, AlphaFold2, OpenFold3, ProteinMPNN, and ESM via JAX-based

A domain-adapted Qwen3.5-9B for aging and longevity biology. L

Transformer encoder-decoder for de novo peptide sequencing from tandem

protein sequence, structure, and biochemical properties to predict class-I immunogenicity

A Python package for protein dynamics analysis

protein language model that has learned the rules of protein

entities, diseases and phenotypes, genes and proteins and many others.