OpenDDE (Aureka Research, 2026)
github.com/aurekaresearch/openddeOpen-source, all-atom biomolecular foundation model that turns co-folding into a scalable engine for structure prediction, design, and optimization across proteins, nucleic acids, and small molecules in drug discovery; ranked first on PXMeter-AB, FoldBench-AB, and 2026ARK-AB antibody-antigen benchmarks (263+ stars, Apache 2.0)
Sourced from
- GitHub — github.com/aurekaresearch/opendde
- Awesome AI for Science — github.com/aurekaresearch/opendde
Related resources
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AlphaFold 3 inference pipeline for unified biomolecular structure prediction of proteins, nucleic acids, small molecules, ions, and post-translational modifications (Google DeepMind, Nature 2024)
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