ProDy
github.com/prody/prodyA Python package for protein dynamics analysis
Sourced from
- Awesome Cheminformatics — github.com/prody/prody
- GitHub — github.com/prody/prody
Related resources
Freely available tools for biological computing in Python, with included cookbook, packaging and thorough documentation. Part of the [Open Bioinformatics Foundation](http://open-bio.org/). Contains the very useful [Entrez](https://biopython.org/DIST/docs/api/Bio.Entrez-module.html) package for API access to the NCBI databases.
Molecular dynamics analysis
Analysis of molecular dynamics trajectories.
A swiss army knife for manipulating and editing PDB files.
Parsers and algorithms for computational chemistry logfiles.