Find open-source science resources

JavaScript library that can be used to generate interactive and highly customizable web-based genome browsers.

BioJS is a library of over hundred JavaScript components enabling you to visualize and process data using current web technologies.

**Comes with samtools!** - Reads simulator.

Computation Pipeline library for python widely used in science and bioinformatics.

A cross-system scripting language for working with big data pipelines in computer systems of different sizes and capabilities.

Pythonic access to the UCSC Genome database.

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data.

Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples.

Customizable pipeline for differential expression analysis with an intuitive GUI.

Embeddable genome viewer. Integration data from a wide variety of sources, and can load data directly from popular genomics file formats including bigWig, BAM, and VCF.

Flexible circular visualization of genome-associated data with BioPerl and SVG.

JavaScript library for drawing canvas-based gene diagrams.

Expertly curated genomics papers to get up to speed on genomics, RNA-seq, statistics (used in genomics), software development, and more.

Perl package for circular plots, which are well suited for genomic rearrangements.

Telseq is a tool for estimating telomere length from whole genome sequence data.

Variant Discovery in High-Throughput Sequencing Data.

Hadoop Oozie-based workflow system focused on genomics data analysis in cloud environments.

A wee tool for random access into BGZF files.

List of resources on alternative splicing including software, databases, and other tools.

A port of [pyVCF](https://github.com/jamescasbon/PyVCF) using Cython for speed.

Horizon chart D3-based JavaScript library for DNA data.

D3 JavaScript based genome viewer. Constructs SVGs.

Automate common SAM & BAM conversions.