vcflib
github.com/vcflib/vcflibA C++ library for parsing and manipulating VCF files.
Sourced from
- Awesome Bioinformatics — github.com/vcflib/vcflib
- GitHub — github.com/vcflib/vcflib
Related resources
Deep learning-based variant caller
Annotate a VCF with other VCFs/BEDs/tabixed files.
A polymorphic bayesian genotyping model with wide applicability.
Freely available tools for biological computing in Python, with included cookbook, packaging and thorough documentation. Part of the [Open Bioinformatics Foundation](http://open-bio.org/). Contains the very useful [Entrez](https://biopython.org/DIST/docs/api/Bio.Entrez-module.html) package for API access to the NCBI databases.
Minimap2 is an pairwise aligner for genomic and spliced nucleotide sequences. It can perform the assembly-to-assembly alignment, and works with gzip'd FASTQ, FASTA formats. It also finds overlaps between long-reads.