Find open-source science resources

protein-encoded genomic data. It identifies orthologous genes using HMM profiles

METEOR is a plateform for quantitative metagenomics profiling of complex

OpenOncology is an open-source platform for precision oncology, designed

OpusTaxa is an open-source Snakemake workflow for the end

Processes 96-well plate absorbance data through blank subtraction, regression

Fully open-source (Apache 2.0) biomolecular structure prediction reproducing AlphaFold3

protein representation learning, providing standardized interfaces for pre-training and diverse

Plans geometric serial dilution series for molecular biology and biochemistry

protein entries, plus dilution and ligation calculation modes through one API-backed

Performs laboratory unit conversions across molarity, OD600 cell density, C

Pythonic access to FASTA files.

ViralQuest is an interactive pipeline designed for the post-assembly

RFdiffusion is an open source method for structure generation, with

NovoTax is an end-to-end pipeline designed to identify

Democratizing AI scientists by transforming any LLM into research systems

scientific tasks including DNA manipulation, literature search, and protein engineering

Comprehensive collection of 125+ ready-to-use scientific skill modules

TransformerEngine-accelerated checkpoints and training recipes for scaling biological foundation

protein binder design with test-time optimization, SOTA on binder

RFantibody is a pipeline for structure-based de novo antibody

197 bioinformatics and life science skills for Claude Code and

Open-source hybrid scientific research agent and workbench replicating Claude

High-accuracy RAG for scientific PDFs with citation support, agentic

AlphaFast is a framework designed to accelerate the Multiple Sequence

AlloPipe is a bioinformatics tool designed to identify candidate minor

Autonomous ML experimentation for biomedical data.

protein design platform via Google Colab integrating AlphaFold2, RoseTTAFold, and ProteinMPNN

protein engineering, and biomolecular design (329+ stars, Apache 2.0 / CC-BY-4.0, 2026)

Neural network-based cryo-EM heterogeneous reconstruction, modeling continuous 3D

protein design using diffusion modeling, equivariant graph neural networks, and conditional

Turn any AI agent into an AI Scientist. The #1

Interaction Fingerprints for protein-ligand complexes and more.

proteins, nucleic acids, small molecules, ions, and post-translational modifications

NVIDIA's open-source platform for building and adapting biological

proteins, nucleic acids, and small molecules in drug discovery; ranked

protein-protein interaction screening with AlphaFold-Multimer and AlphaFold 3, supporting

General-purpose RNA language model with 650M parameters pretrained on

Pythonic Access to the Ensembl database.

protein design framework integrating Boltz, AlphaFold2, OpenFold3, ProteinMPNN, and ESM via JAX-based

Transformer encoder-decoder for de novo peptide sequencing from tandem

protein sequence, structure, and biochemical properties to predict class-I immunogenicity

A Python package for protein dynamics analysis

entities, diseases and phenotypes, genes and proteins and many others.

Molecular dynamics analysis

PyTorch framework for training neural network interatomic potentials with the

protein language-model features, orthology, curated knowledge, protein association networks

protein folding and interactions. It calculates polar interaction changes and analyzes

This tool estimates the completeness of KEGG pathway modules from

Local-first, open-source healthcare AI toolkit for clinical NLP

protein interaction networks, and scientific knowledge graph learning (23.7k+ stars