ankur0050/nucleotide-transformer-v2-50m-genomicbenchmarks-ft

https://huggingface.co/ankur0050/nucleotide-transformer-v2-50m-genomicbenchmarks-ft
Activeby ankur005001updated 3 months ago
Python

Full weight-level fine-tuning of InstaDeepAI/nucleotide-transformer-v2-50m-multi-species for binary DNA sequence classification on two GenomicBenchmarks tasks. All parameters are updated rather than using LoRA or a frozen backbone, with a leakage-free train/validation/test protocol and multi-seed…

Sourced from

  • HuggingFace — ankur0050/nucleotide-transformer-v2-50m-genomicbenchmarks-ft

Related resources

Eleuthia is a binary protein variant classifier that predicts whether a mutated protein sequence is likely Pathogenic or Benign. It is fine-tuned from ESM-2 and intended for research support in variant prioritization workflows.

Active682 months ago
Python

464 fine-tuned DNABERT models for regulatory variant effect prediction

Active242 months ago
Python

HantaBERT fine-tunes DNABERT-2 on hantavirus RNA sequences for three simultaneous classification tasks: species/lineage, host, and geographic origin. A single forward pass produces predictions for all three tasks along with a 768-dimensional embedding suitable for phylogenetic visualization.

Active03 months ago
Python

Freely available tools for biological computing in Python, with included cookbook, packaging and thorough documentation. Part of the [Open Bioinformatics Foundation](http://open-bio.org/). Contains the very useful [Entrez](https://biopython.org/DIST/docs/api/Bio.Entrez-module.html) package for API access to the NCBI databases.

Active5.2K1 month ago
Python
NOASSERTION

Deep learning-based variant caller

Idle3.8K7 months ago
Python
BSD-3-Clause

Pythonic access to FASTA files.

Active4881 month ago
Python
NOASSERTION