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protein-encoded genomic data. It identifies orthologous genes using HMM profiles

METEOR is a plateform for quantitative metagenomics profiling of complex

OpenOncology is an open-source platform for precision oncology, designed

OpusTaxa is an open-source Snakemake workflow for the end

Processes 96-well plate absorbance data through blank subtraction, regression

Fully open-source (Apache 2.0) biomolecular structure prediction reproducing AlphaFold3

protein functions by calculating associations between expression patterns in multi

Deep learning framework for molecular docking extending AutoDock Vina with

protein representation learning, providing standardized interfaces for pre-training and diverse

Plans geometric serial dilution series for molecular biology and biochemistry

protein entries, plus dilution and ligation calculation modes through one API-backed

Performs laboratory unit conversions across molarity, OD600 cell density, C

protein language models (300M/600M/6B) trained on billions of protein sequences

Pythonic access to FASTA files.

DiscrimAlign is a statistical model designed for discriminative learning of

ViralQuest is an interactive pipeline designed for the post-assembly

RFdiffusion is an open source method for structure generation, with

NovoTax is an end-to-end pipeline designed to identify

Workflow optimized for the analysis of rare diseases, designed to

Democratizing AI scientists by transforming any LLM into research systems

Provides a consistent interface for downloading, storing, and accessing immune

search and clustering suite for protein and nucleotide sequence sets.

scientific tasks including DNA manipulation, literature search, and protein engineering

Comprehensive collection of 125+ ready-to-use scientific skill modules

Molecular dynamics in JAX

TransformerEngine-accelerated checkpoints and training recipes for scaling biological foundation

protein structures, multiple sequence alignments, and phylogenies alongside nucleotide-level

protein binder design with test-time optimization, SOTA on binder

RFantibody is a pipeline for structure-based de novo antibody

proteins. This package contains useful functions to analyze patterns of paired

197 bioinformatics and life science skills for Claude Code and

Open-source hybrid scientific research agent and workbench replicating Claude

High-accuracy RAG for scientific PDFs with citation support, agentic

AlphaFast is a framework designed to accelerate the Multiple Sequence

AlloPipe is a bioinformatics tool designed to identify candidate minor

Autonomous AI scientist research

Autonomous ML experimentation for biomedical data.

PinPath enables flexible visualization of (omics) data onto pathways diagrams

plot protein-protein interaction networks, all from inside of R.

Free, open-source desktop AI research assistant that runs locally

Novabrowse is an interactive framework for high-resolution synteny analysis

proteins localize in to the mitochondria. From these, mitology provides

protein marker channels. simpleSeg can also be used for the normalization

protein design platform via Google Colab integrating AlphaFold2, RoseTTAFold, and ProteinMPNN

protein engineering, and biomolecular design (329+ stars, Apache 2.0 / CC-BY-4.0, 2026)

Neural network-based cryo-EM heterogeneous reconstruction, modeling continuous 3D

protein expression values. The model parameter estimates can be stabilized

Open-source AI workbench for scientific research that automates the

protein design using diffusion modeling, equivariant graph neural networks, and conditional

Turn any AI agent into an AI Scientist. The #1