Find open-source science resources
A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
Filters
Health
Domain
Language
License
Source
Type(1)
162 of 7,765 resources matching “protein”
Showing 1–50
internlm/Sage-SciPerception
by internlmSage-SciPerception Scientific perception for language models · 书生·元征 Connect
HuggingFaceBio/Carbon-A-1.2B
by HuggingFaceBioA DNA annotation model from the Carbon family.
Scinetics-ai/all-atom-structure-tokenizer
by Scinetics-aiA PyTorch reference implementation of the tokenizer described in the
nvidia/RFD4-Proteina
by nvidiaSequence and structure, designed together.Baker Lab × NVIDIA GenAIR Project page
maltefranke/morph
by maltefrankeDrugs scaffold decoration, and CrossDocked scaffold decoration in protein pockets.
programmable-genomics/BATv1
by programmable-genomicsmeasure the binding of transcription factors and other DNA-associated proteins.
HuggingFaceBio/Carbon-X
by HuggingFaceBioBlog | Hugging Face Bio | Code
bios-labs/RFD4-Proteina-MLX-fp16
by bios-labsprotein binders with RFD4-Proteina entirely on a MacBook: target
westlake-repl/Pinal
by westlake-replprotein design framework that translates human design intent into novel
HuggingFaceBio/Carbon-X-SFT
by HuggingFaceBioBlog | Carbon-X | Carbon-X-Base | Hugging Face Bio | Code
*GenerRNA is a PFN™ generative pre-trained language model for
Heath-AFM-Lab/afMLevel-background-unet
by Heath-AFM-LabThis U‑Net model predicts tilt, z scanner drift, and
nvidia/RFD4-Proteina-Diffusers
by nvidiaSequence and structure, designed together.Baker Lab × NVIDIA GenAIR Project page
lighteternal/biodecision-v2-4b
by lighteternalA System-1 decision model for biomedicine, pharma and clinical
Zatom-AI/Zatom-2
by Zatom-AIproteins. Introduced in Zatom-2: Multitask Pretraining on Atomistic Data
insilicomedicine/longevity-llm
by insilicomedicineA domain-adapted Qwen3.5-9B for aging and longevity biology. L
drzo/ESMC-6B
by drzoprotein language model that has learned the rules of protein
Contrastive LEarning with Soft Targets from TCRdist. Checkpoint SCEPTR6LACsoft800k20ep_bs1024
migi-null/DeepGPS-3D
by migi-nullprotein's 3D subcellular localization volume from a matched nuclear
This model card provides an overview of the intended use
state-of-the-art protein language model trained on billions of protein sequences…
state-of-the-art protein language model trained on billions of protein sequences…
state-of-the-art protein language model trained on billions of protein sequences…
biohub/ESMC-6B
by biohubprotein language model that has learned the rules of protein
biohub/ESMC-600M
by biohubprotein language model that has learned the rules of protein
biohub/ESMC-300M
by biohubprotein language model that has learned the rules of protein
biohub/ESMFold2
by biohubprotein structure prediction and design that defines a new frontier
biohub/ESMFold2-Fast
by biohubprotein structure prediction and design that defines a new frontier
ctheodoris/Geneformer
by ctheodoris# Geneformer Geneformer is a foundational transformer model pretrained on a
Aurigene-AI/ChemFM-1B
by Aurigene-AISee the upstream model card for full details, training data
The locus-to-gene (L2G) model prioritises likely causal genes
egcastro/ReLSO
by egcastroModel for Latent Space Optimization and Generation of Proteins - github repo
nabbo/protenix_v2
by nabboprovides the pretrained Protenix v2 model weights for protein structure prediction.
SII-GAIR-NLP/RIBOSPAN-FM
by SII-GAIR-NLPMany full-length RNAs, particularly mRNAs, exceed the ~1K context
loveCloud/OmniTCR
by loveCloudOmniTCR is a component-aware autoregressive foundation model for learning
tzcfly/PertMind
by tzcflyPertMind is a biological language model built around a central
NavitraTechnologies01/navikinase-1.0
by NavitraTechnologies01protein language model for the phosphotransferase superfamily (EC 2.7.-: protein
protein variant classifier that predicts whether a mutated protein sequence
IQuestLab/IQuest-UBio-MolFM-V1.5
by IQuestLabUBio-MolFM is a foundation-model suite for molecular modeling
GrimSqueaker/ProtSent-V2-ESMC-300M
by GrimSqueakerprotein embeddings where biological similarity maps to embedding proximity. Intended
PypCoder/SERAPH
by PypCoderprotein secondary structure prediction. It processes raw single amino acid
recursionpharma/nesso
by recursionpharmaprotein–ligand binding-affinity model. Given a protein sequence and a ligand
internlm/Intern-MemDec-4B
by internlm💻 GitHub Repo • 🤗 Model Collections • 📖 MemSFT Paper
GrimSqueaker/ProtSent-V2.5-35M
by GrimSqueakerProtSent-V2 35M plus one more contrastive pass on a
GrimSqueaker/ProtSent-V2-150M
by GrimSqueakerprotein embeddings where biological similarity maps to embedding proximity. Intended
rednaSander/omicsfm
by rednaSanderyields a protein-protein association network without task-specific training.