Heath-AFM-Lab/afMLevel-background-unet

This U‑Net model masks features in Atomic Force Microscopy (AFM) height maps. It outputs a probability mask image, the same size as the raw AFM image; the accompanying python package, afMLevel code then applies a threshold (typically 0.5) to produce a binary mask.

!Nucleus Resynthesis

Vortex Scientific is a from-scratch AI model family designed for deep scientific reasoning. Built from the ground up with a novel hybrid state-space + attention architecture, optimized for consumer laptop hardware (Apple Silicon MacBooks and Nvidia 4060 laptop GPUs).

ONNX export of the Cellpose cpsam (Cellpose-SAM) model for cell segmentation in microscopy images.

PhenoSeq is a Gaussian diffusion model that generates scGPT RNA-seq embeddings conditioned on ViT-L microscopy imaging features. Given fluorescence microscopy images of a cell or well, it predicts a 512-dimensional scGPT embedding representing the transcriptomic state of individual cells — enabling…