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This U‑Net model masks features in Atomic Force Microscopy (AFM) height maps. It outputs a probability mask image, the same size as the raw AFM image; the accompanying python package, afMLevel code then applies a threshold (typically 0.5) to produce a binary mask.

ONNX export of the Cellpose cpsam (Cellpose-SAM) model for cell segmentation in microscopy images.

Matěj Pekár, Vít Musil, Rudolf Nenutil, Petr Holub, Tomáš Brázdil

Segment Anything in 3D Medical Images and Videos

Pre-trained weights and exported models for our spine segmentation project. The source code, designed to reproduce our test results and facilitate training and running inference on your own data, is available on GitHub: https://github.com/MMIV-ML/fastMONAI/tree/master/research

I present a demo showcasing retinal vessel segmentation using the U-Net model, which is a well-known and widely used model in medical image segmentation. The model was trained on the DRIVE dataset, and the training process was conducted on Google Colab.