nabbo/protenix_v2

This repository contains the PyTorch model weights for MarS-FM (Markov Space Flow Matching) trained on the MD-CATH dataset. This model was introduced in the ICLR 2026 paper: MarS-FM: Generative Modeling of Molecular Dynamics via Markov State Models.

Pretrained weights for the baseline DeepGPS-3D model: a conditional 3D denoising diffusion model that predicts a protein's 3D subcellular localization volume from a matched nuclear 3D volume and the protein's ESM2 sequence embedding.

vitreg4so150mp14ls_dino-v2-bio is a Bio-DINO image encoder for natural photographs of living organisms. It uses a SoViT-150M/14 Vision Transformer with 4 register tokens and 133.6M backbone parameters, trained with a DINOv2-style self-supervised objective on approximately 31 million curated images…