Find open-source science resources

A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

162 of 7,765 resources matching “protein”

Showing 51–100

encoder-only component of GB.StructureTokenizer for tokenization of protein structures.

Active743 months ago

polymathic-ai/MIMIC

by polymathic-ai

protein together with a range of structural and functional tracks

Active503 months ago

Trinity-Mini-AI-Scientist

Active133 months ago
Python

SMILES structures based on both disease pathways and protein sequence.

Active463 months ago
Python

NucleusDiff

Active03 months ago

protein–protein and peptide–MHC interaction, and more — following the…

Active993 months ago
Python

protein structure prediction and design that defines a new frontier

Active113 months ago
Python

SMILES structures based on both disease pathways and protein sequence.

Active6804 months ago
Python

650M with LoRA for predicting protein subcellular localization (10 classes).

Active184 months ago
Python

Distilling Boltz: Flow Maps for Fast All-Atom Cofolding

Active04 months ago

!ESMC ProtHash Banner

Active464 months ago

!Python

Active04 months ago

🤗 Blog | 📄 Paper | 💻 Code | 🌐 FineMed | 🩺 DoctoBERT

Active204 months ago

Gravity-bio-16B-A3B is a biology-focus midtrained model

Active2354 months ago
Python

protein aging clock that predicts chronological age from 85 unique

Active04 months ago

protein aging clock that predicts chronological age from 92 Olink

Active04 months ago

Molexar-10M Base is the unconditional base model for Molexar

Active154 months ago
Python

Molexar-10M Omni is the universal multi-condition model for

Active114 months ago
Python

> Source code, training scripts, and inference utilities for this

Active04 months ago

both molecules and proteins within a single decoder-only architecture.

Active1064 months ago
Python

This Hugging Face repository stores the official resources for RAMER

Active04 months ago

promptable and aligned protein language models for protein sequence generation.

Active1.6K4 months ago
Python

KAU-BioMedLLM is a research prototype for source-grounded biomedical

Active04 months ago
Python

 

Active624 months ago

 

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Active384 months ago

Mirror of the Boltz-2 structure- and affinity-prediction weights

Active04 months ago

PRISM is an antibody language model that jointly predicts amino

Active04 months ago

JAX/Equinox parameters for Promera, a dual-purpose biomolecular generative model

Active05 months ago

protein sequences, 236 million protein structures, and 539 million proteins

Active2K5 months ago
Python

This model card provides an overview of the intended use

Active05 months ago
Python

This model card provides an overview of the intended use

Active10K5 months ago
Python

This set of model weights was released with the GitHub

Active1.1K5 months ago
Python

protein language model for protein sequence generation. It is the smallest

Active2.6K5 months ago
Python

protein language model for protein sequence generation. It is the largest

Active995 months ago
Python

This repository hosts release artifacts for ReCLIP:

Active05 months ago

!Protein-ligand interaction header

Active65 months ago
Python

This set of model weights was released with the GitHub

Active6.2K5 months ago
Python

650M, layer 33) for interpretability research on protein language models.

Active185 months ago

protein sequences and 3D structures, conditioned on and co-folded

Active05 months ago

Target-Conditioned Molecular Ideation Model for Drug Discovery Research

Active05 months ago
Python

Gemma 4 E2B fine-tuned on 225K drug–target pairs

Active255 months ago
Python

- 2025-05-15: We identified a bug in the Bacformer

Active8K5 months ago
Python

- 2025-05-15: We identified a bug in the Bacformer

Active5475 months ago
Python

This U‑Net model masks features in Atomic Force Microscopy

Idle06 months ago

# InstaNovo: De novo Peptide Sequencing Model ## Model Description

Idle246 months ago

# InstaNovo: De novo Peptide Sequencing Model ## Model Description

Idle236 months ago

PickyBinders/tea

by PickyBinders

!Model Architecture

Idle5646 months ago

A 50% magnitude-pruned version of facebook/esm2t1235MUR50D optimized for efficient

Idle426 months ago
Python