Find open-source science resources

protein embeddings (AlphaFold2, BioEmbeddings, ESM-2, ProtVec) for advanced systems

protein folding, conformational transitions, and RNA-protein dynamics using packages

protein chains based on AlphaFold predicted aligned error (PAE). It aids

protein-protein interaction (PPI) networks by modeling them as bipartite

protein transition pathways at atomistic resolution. It utilizes generative active

protein structural data from PDB/mol2 files, creating residue-centered spherical

perform fast database searches and multiple alignments of protein structures.

protein structures, enabling high-throughput computational studies of enzyme catalysis

protein sequences, enabling visualization and comparison of results onto phylogenetic

alignments between UniProt Knowledgebase sequences and Protein Data Bank structures.

protein surfaces to reveal structural and sequence differences and similarities

protein structures. It combines statistical pLDDT score analysis with an interactive

protein sequences across the microbial tree of life using structural

extract entities like genes, proteins, and sequences from biomedical text.

involving successive, competing reactions in biomolecules like proteins and DNA.

number changes) alongside protein-defined cell states in intact tissues.

protein sets to anchor the manual curation of tiny, hard

protein therapeutics, such as antibodies and nanobodies, without relying on reference

protein pair language model that learns inter-protein context directly

protein- and metabolite-mediated cell-cell communication over time. It infers

protein semantics. It is designed for advancing sequence design and gaining

proteins. It enables rapid, large-scale proteome screening of membrane proteins.

protein sequences specifically within prokaryotic cells, utilizing a dual-branch

protein sequences using local, global, or semi-global dynamic-programming

protein biomarkers for human complex diseases and reported to outperform

gene regulatory network analysis, and protein structure and docking analysis.