Find open-source science resources
A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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229 of 7,055 resources
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BGI-HangzhouAI/Genos-m
by BGI-HangzhouAIGenos-m is a foundation model for human-associated microbial genomes. It is trained to model microbial DNA sequences at single-nucleotide resolution and supports ultra-long genomic contexts up to one million tokens.
Qwen3-8B-syco_med-gated-attention-FT is a plug-and-play gated attention weight released for AI safety research.
vadimbelsky/qwen3.5-medical-ft
by vadimbelskyLoRA fine-tune of Qwen3.5-9B on synthetic clinical triage Q&A pairs generated from PubMed Central open-access papers. The model is specialized for emergency-medicine decision-making: triaging patients, applying clinical decision rules, and generating protocol-grounded triage recommendations.
Base model: google/gemma-4-26b-it Architecture: MoE — 26B total / ≈4B active parameters (1 shared expert + 8 routed from a pool of 128 per MoE layer, 30 MoE layers) Method: Activation-directed expert surgery — 128 → 64 experts per layer (50% reduction) Quantization: Q4KM (≈9.7 GB on disk) Tags:…
Base model: google/gemma-4-26b-it Architecture: MoE — 26B total / ≈4B active parameters (1 shared expert + 8 routed from a pool of 128 per MoE layer, 30 MoE layers) Method: Activation-directed expert surgery — 128 → 64 experts per layer (50% reduction) Quantization: Q4KM (≈9.7 GB on disk) Tags:…
Base model: google/gemma-4-26b-it Architecture: MoE — 26B total / ≈4B active parameters (1 shared expert + 8 routed from a pool of 128 per MoE layer, 30 MoE layers) Method: Activation-directed expert surgery — 128 → 64 experts per layer (50% reduction) Quantization: Q4KM (≈9.7 GB on disk) Tags:…
Gemma 4 E2B fine-tuned on 225K drug–target pairs for novel small-molecule generation.
MedPsy-4B is a state-of-the-art, text-only medical and healthcare language model purpose-built for edge deployment. Built on top of Qwen3-4B-Thinking-2507 and post-trained with a multi-stage pipeline (supervised fine-tuning + reinforcement learning) on curated medical data, it surpasses models…
MedPsy-1.7B is a state-of-the-art, text-only medical and healthcare language model purpose-built for edge and smartphone deployment. Built on top of Qwen3-1.7B (operated in thinking mode, i.e. with enable_thinking=True) and post-trained with a multi-stage pipeline (supervised fine-tuning +…
InstaDeepAI/instanovo-v1.0.0
by InstaDeepAI# InstaNovo: De novo Peptide Sequencing Model ## Model Description
InstaDeepAI/instanovo-v1.1.0
by InstaDeepAI# InstaNovo: De novo Peptide Sequencing Model ## Model Description
A domain-optimized reasoning model built on DeepSeek-R1-Distill-Qwen-32B, refined through a multi-stage pipeline of GPTQ quantization-aware training and QLoRA fine-tuning. Achieves 84% on MedQA — within 4 points of GPT-4o — in a ~20GB package that fits on a single L40/L40s GPU.
simmani91/GeneLinguaLM-v5
by simmani91GeneLinguaLM is a multimodal model that generates natural language descriptions of protein functions from amino acid sequences.
Duchifat-2.3-Instruct is a state-of-the-art, instruction-tuned Large Language Model developed by TopAI. As the flagship of the Duchifat series, this model represents a fundamental breakthrough in how Hebrew is processed, reasoned, and generated in the LLM era.
Fine-tuned version of google/gemma-4-E4B-it across three professional domains — Medical, Legal, and Finance — using QLoRA (4-bit NF4) with Optuna-tuned hyperparameters, trained on Kaggle T4 GPU.
learning-unit/L1-16B-A3B
by learning-unitL1 (Learning Unit 1) is the first language model from Lunit and Lunit Consortium, purpose-built for the medical domain. Derived from Gravity-16B-A3B-Base, L1 is designed for clinical reasoning and decision support.
Verdugie/STEM-Oracle-27B
by Verdugie# or·a·cle /ˈôrəkəl/ — a source of wise counsel; one who provides authoritative knowledge. From Latin ōrāculum, meaning divine announcement. In computer science, an oracle is a black box that always returns the correct answer — you don't ask it how it knows, you ask and it answers.
GENTEL-Lab/EVA
by GENTEL-LabEVA is a generative foundation model for universal RNA modeling and design, trained on OpenRNA v1 — a curated atlas of 114 million full-length RNA sequences spanning all domains of life.
ClinicDx1/ClinicDx
by ClinicDx1ClinicDx V1 is a fine-tuned multimodal clinical decision support (CDS) model based on google/medgemma-4b-it. It is trained to generate structured, evidence-grounded clinical assessments from patient presentations, integrating a retrieval-augmented knowledge base (KB) pipeline and an audio input…
Matrix-Corp/Vortex-13b-V1
by Matrix-CorpVortex Scientific is a from-scratch AI model family designed for deep scientific reasoning. Built from the ground up with a novel hybrid state-space + attention architecture, optimized for consumer laptop hardware (Apple Silicon MacBooks and Nvidia 4060 laptop GPUs).
Hengchang-Liu/D3LM-from-nt
by Hengchang-LiuThis repository contains the model presented in D3LM: A Discrete DNA Diffusion Language Model for Bidirectional DNA Understanding and Generation.
A compact protein language model distilled from ProtGPT2 using complementary-regularizer distillation---a method that combines uncertainty-aware position weighting with calibration-aware label smoothing to achieve 31% better perplexity than standard knowledge distillation at 3.8x compression.
littleworth/protgpt2-distilled-small
by littleworthA compact protein language model distilled from ProtGPT2 using complementary-regularizer distillation---a method that combines uncertainty-aware position weighting with calibration-aware label smoothing to achieve 54% better perplexity than standard knowledge distillation at 9.4x compression.
littleworth/protgpt2-distilled-tiny
by littleworthA compact protein language model distilled from ProtGPT2 using complementary-regularizer distillation---a method that combines uncertainty-aware position weighting with calibration-aware label smoothing to achieve 87% better perplexity than standard knowledge distillation at 20x compression.
Clinical-Reasoning-Hub/Diagnostic-Medicine-R1
by Clinical-Reasoning-HubFrom Inquiry to Decision: Building Trustworthy Medical AI
winninghealth/WiNGPT2-Llama-3-8B-Chat
by winninghealthWiNGPT 是一个基于GPT的医疗垂直领域大模型,旨在将专业的医学知识、医疗信息、数据融会贯通,为医疗行业提供智能化的医疗问答、诊断支持和医学知识等信息服务,提高诊疗效率和医疗服务质量。
While large language models (LLMs) have achieved impressive progress, their application in scientific domains such as chemistry remains hindered by shallow domain understanding and limited reasoning capabilities. In this work, we focus on the specific field of chemistry and develop a Chemical…
ChemDFM-v2.0 is the latest non-thinking model of ChemDFM, the pioneering open-sourced dialogue foundation model for Chemistry and molecule science.
> [!NOTE] > Inspired by the thought of: what if you could speak to an offline medical assistant that doesn't decline to answer some of your questions?
microsoft/MediPhi-Guidelines
by microsoftThe MediPhi Model Collection comprises 7 small language models of 3.8B parameters from the base model Phi-3.5-mini-instruct specialized in the medical and clinical domains. The collection is designed in a modular fashion. Five MediPhi experts are fine-tuned on various medical corpora (i.e.
microsoft/MediPhi-Clinical
by microsoftThe MediPhi Model Collection comprises 7 small language models of 3.8B parameters from the base model Phi-3.5-mini-instruct specialized in the medical and clinical domains. The collection is designed in a modular fashion. Five MediPhi experts are fine-tuned on various medical corpora (i.e.
microsoft/MediPhi-PubMed
by microsoftThe MediPhi Model Collection comprises 7 small language models of 3.8B parameters from the base model Phi-3.5-mini-instruct specialized in the medical and clinical domains. The collection is designed in a modular fashion. Five MediPhi experts are fine-tuned on various medical corpora (i.e.
microsoft/MediPhi
by microsoftThe MediPhi Model Collection comprises 7 small language models of 3.8B parameters from the base model Phi-3.5-mini-instruct specialized in the medical and clinical domains. The collection is designed in a modular fashion. Five MediPhi experts are fine-tuned on various medical corpora (i.e.
microsoft/MediPhi-Instruct
by microsoftThe MediPhi Model Collection comprises 7 small language models of 3.8B parameters from the base model Phi-3.5-mini-instruct specialized in the medical and clinical domains. The collection is designed in a modular fashion. Five MediPhi experts are fine-tuned on various medical corpora (i.e.
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microsoft/llava-med-7b-delta
by microsoftThis model was added by Hugging Face staff.
vandijklab/C2S-Scale-Gemma-2-27B
by vandijklabGitHub homepage: Cell2Sentence GitHub
InstaDeepAI/instanovoplus-v1.1.0
by InstaDeepAIInstaNovoPlus is a diffusion-based model for de novo peptide sequencing from mass spectrometry data. This model leverages multinomial diffusion for accurate, database-free peptide identification for large-scale proteomics experiments.
Typhoon-Si-Med-Thinking-4B is Southeast Asia’s first state-of-the-art, small, and efficient medical reasoning model, jointly developed by Typhoon (SCB 10X) and the Siriraj Informatics and Data Innovation Center (SiData+) at Siriraj Hospital, Mahidol University.
stanfordmimi/MedVAL-4B
by stanfordmimiMedVAL-4B (medical text validator) is a language model fine-tuned to assess AI-generated medical text outputs at near physician-level reliability.
Here is the pretrained version of PolyTAO, the first pretrained generative language model for polymer design.
NovoMolGen is a family of molecular foundation models trained on 1.5 billion ZINC-22 molecules with Llama architectures and FlashAttention. It achieves state-of-the-art performance on both unconstrained and goal-directed molecule generation tasks.
Palmyra-Med, a powerful LLM designed for healthcare