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A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

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The MediPhi Model Collection comprises 7 small language models of 3.8B parameters from the base model Phi-3.5-mini-instruct specialized in the medical and clinical domains. The collection is designed in a modular fashion. Five MediPhi experts are fine-tuned on various medical corpora (i.e.

Idle7948 months ago
Python

The MediPhi Model Collection comprises 7 small language models of 3.8B parameters from the base model Phi-3.5-mini-instruct specialized in the medical and clinical domains. The collection is designed in a modular fashion. Five MediPhi experts are fine-tuned on various medical corpora (i.e.

Idle1328 months ago
Python

The MediPhi Model Collection comprises 7 small language models of 3.8B parameters from the base model Phi-3.5-mini-instruct specialized in the medical and clinical domains. The collection is designed in a modular fashion. Five MediPhi experts are fine-tuned on various medical corpora (i.e.

Idle1K8 months ago
Python

The MediPhi Model Collection comprises 7 small language models of 3.8B parameters from the base model Phi-3.5-mini-instruct specialized in the medical and clinical domains. The collection is designed in a modular fashion. Five MediPhi experts are fine-tuned on various medical corpora (i.e.

Idle2K8 months ago
Python

Support our open-source dataset and model releases!

Idle608 months ago
Python

GitHub homepage: Cell2Sentence GitHub

Idle2.1K9 months ago
Python

InstaNovoPlus is a diffusion-based model for de novo peptide sequencing from mass spectrometry data. This model leverages multinomial diffusion for accurate, database-free peptide identification for large-scale proteomics experiments.

Idle2110 months ago

Typhoon-Si-Med-Thinking-4B is Southeast Asia’s first state-of-the-art, small, and efficient medical reasoning model, jointly developed by Typhoon (SCB 10X) and the Siriraj Informatics and Data Innovation Center (SiData+) at Siriraj Hospital, Mahidol University.

Idle5110 months ago

MedVAL-4B (medical text validator) is a language model fine-tuned to assess AI-generated medical text outputs at near physician-level reliability.

Idle20310 months ago
Python

NovoMolGen is a family of molecular foundation models trained on 1.5 billion ZINC-22 molecules with Llama architectures and FlashAttention. It achieves state-of-the-art performance on both unconstrained and goal-directed molecule generation tasks.

Idle40311 months ago

Palmyra-Med, a powerful LLM designed for healthcare

Idle5311 months ago
Python

中文版说明

Idle14711 months ago
Python

Neeto-1.0-8b is an openly released biomedical large language model (LLM) created by BYOL Academy to assist learners and practitioners with medical exam study, literature understanding, and structured clinical reasoning.

Idle7.7K11 months ago
Python

Highly focused on medical Training datasets ; + Upgraded inplace

Idle1201 year ago
Python

darkknight25/deepseek-16b-medical-GPT is a fine-tuned version of deepseek-ai/deepseek-l6b-moe-chat, optimized for medical question answering, reasoning, and clinical summarization using QLoRA and open-access healthcare datasets.

Idle01 year ago
Python

This is a merge of pre-trained language models created using mergekit, combining the specialty and general reasoning skills of Esper 3 8b and Shining Valiant 3 8b.

Idle151 year ago
Python

!image # Compumacy-Experimental_MF ## A Specialized Language Model for Clinical Psychology & Psychiatry

Idle291 year ago
Python

!ether0 logo

Idle2951 year ago

FineMedLM-o1

Idle151 year ago
Python

Using llama.cpp release b5466 for quantization.

Idle1.6K1 year ago

Using llama.cpp release b5466 for quantization.

Idle4.3K1 year ago

Dans-PersonalityEngine-V1.3.0-24b Dans-PersonalityEngine-V1.3.0-24b ⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⢀⠀⠄⠀⡂⠀⠁⡄⢀⠁⢀⣈⡄⠌⠐⠠⠤⠄⡀⠀⠀⠀⠀⠀⠀⠀⠀⠀ ⠀⠀⠀⠀⠀⠀⠀⠀⡄⠆⠀⢠⠀⠛⣸⣄⣶⣾⡷⡾⠘⠃⢀⠀⣴⠀⡄⠰⢆⣠⠘⠰⠀⡀⠀⠀⠀⠀⠀ ⠀⠀⠀⠀⠀⠀⠀⠀⠀⠃⠀⡋⢀⣤⡿⠟⠋⠁⠀⡠⠤⢇⠋⠀⠈⠃⢀⠀⠈⡡⠤⠀⠀⠁⢄⠀⠀⠀⠀ ⠀⠀⠀⠀⠀⠁⡂⠀⠀⣀⣔⣧⠟⠋⠀⢀⡄⠀⠪⣀⡂⢁⠛⢆⠀⠀⠀⢎⢀⠄⢡⠢⠛⠠⡀⠀⠄⠀⠀ ⠀⠀⡀⠡⢑⠌⠈⣧⣮⢾⢏⠁⠀⠀⡀⠠⠦⠈⠀⠞⠑⠁⠀⠀⢧⡄⠈⡜⠷⠒⢸⡇⠐⠇⠿⠈⣖⠂⠀…

Idle2.9K1 year ago
Python

Dans-PersonalityEngine-V1.3.0-12b Dans-PersonalityEngine-V1.3.0-12b ⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⢀⠀⠄⠀⡂⠀⠁⡄⢀⠁⢀⣈⡄⠌⠐⠠⠤⠄⡀⠀⠀⠀⠀⠀⠀⠀⠀⠀ ⠀⠀⠀⠀⠀⠀⠀⠀⡄⠆⠀⢠⠀⠛⣸⣄⣶⣾⡷⡾⠘⠃⢀⠀⣴⠀⡄⠰⢆⣠⠘⠰⠀⡀⠀⠀⠀⠀⠀ ⠀⠀⠀⠀⠀⠀⠀⠀⠀⠃⠀⡋⢀⣤⡿⠟⠋⠁⠀⡠⠤⢇⠋⠀⠈⠃⢀⠀⠈⡡⠤⠀⠀⠁⢄⠀⠀⠀⠀ ⠀⠀⠀⠀⠀⠁⡂⠀⠀⣀⣔⣧⠟⠋⠀⢀⡄⠀⠪⣀⡂⢁⠛⢆⠀⠀⠀⢎⢀⠄⢡⠢⠛⠠⡀⠀⠄⠀⠀ ⠀⠀⡀⠡⢑⠌⠈⣧⣮⢾⢏⠁⠀⠀⡀⠠⠦⠈⠀⠞⠑⠁⠀⠀⢧⡄⠈⡜⠷⠒⢸⡇⠐⠇⠿⠈⣖⠂⠀…

Idle661 year ago
Python

Dans-PersonalityEngine-V1.1.0-12b This model series is intended to be multifarious in its capabilities and should be quite capable at both co-writing and roleplay as well as find itself quite at home performing sentiment analysis or summarization as part of a pipeline.

Idle241 year ago
Python

Dans-PersonalityEngine-V1.2.0-24b ⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⠀⢀⠀⠄⠀⡂⠀⠁⡄⢀⠁⢀⣈⡄⠌⠐⠠⠤⠄⡀⠀⠀⠀⠀⠀⠀⠀⠀⠀ ⠀⠀⠀⠀⠀⠀⠀⠀⡄⠆⠀⢠⠀⠛⣸⣄⣶⣾⡷⡾⠘⠃⢀⠀⣴⠀⡄⠰⢆⣠⠘⠰⠀⡀⠀⠀⠀⠀⠀ ⠀⠀⠀⠀⠀⠀⠀⠀⠀⠃⠀⡋⢀⣤⡿⠟⠋⠁⠀⡠⠤⢇⠋⠀⠈⠃⢀⠀⠈⡡⠤⠀⠀⠁⢄⠀⠀⠀⠀ ⠀⠀⠀⠀⠀⠁⡂⠀⠀⣀⣔⣧⠟⠋⠀⢀⡄⠀⠪⣀⡂⢁⠛⢆⠀⠀⠀⢎⢀⠄⢡⠢⠛⠠⡀⠀⠄⠀⠀ ⠀⠀⡀⠡⢑⠌⠈⣧⣮⢾⢏⠁⠀⠀⡀⠠⠦⠈⠀⠞⠑⠁⠀⠀⢧⡄⠈⡜⠷⠒⢸⡇⠐⠇⠿⠈⣖⠂⠀ ⠀⢌⠀⠤⠀⢠⣞⣾⡗⠁⠀⠈⠁⢨⡼⠀⠀⠀⢀⠀⣀⡤⣄⠄⠈⢻⡇⠀⠐⣠⠜⠑⠁⠀⣀⡔⡿⠨⡄…

Idle761 year ago
Python

# Mol-Llama-3.1-8B-Instruct [Project Page] [Paper] [GitHub]

Idle1491 year ago
Python

🚀 Meerkat-8B is a new instruction-tuned medical AI system of the Meerkat model family. The model was based on the Meta's Llama-3-8B-Instruct model and fine-tuned using our new synthetic dataset consisting of high-quality chain-of-thought reasoning paths sourced from 18 medical textbooks, along…

Idle4261 year ago
Python

🚀 Meerkat-7B-v1.0 is an instruction-tuned medical AI system that surpasses the passing threshold of 60% for the United States Medical Licensing Examination (USMLE) for the first time among all 7B-parameter models. The model was trained using our new synthetic dataset consisting of high-quality…

Idle921 year ago
Python

This is https://huggingface.co/kingabzpro/Qwen-3-32B-Medical-Reasoning applied to https://huggingface.co/Qwen/Qwen3-32B Original model card created by @kingabzpro

Idle3421 year ago
Python

GP-MoLFormer is a class of models pretrained on SMILES string representations of 0.65-1.1B molecules from ZINC and PubChem. This repository is for the model pretrained on all the unique molecules from both datasets.

Idle1.5K1 year ago
Python

## Model Description EYE-Llama_gqa is a large language model specifically designed for ophthalmic question-answering (QA). It is built upon the Llama 2 architecture and fine-tuned on a the EYE-lit and EYE-QA+ dataset.

Idle1651 year ago
Python

This project fine-tunes the meta-llama/Llama-4-Scout-17B-16E-Instruct model using a medical reasoning dataset (FreedomIntelligence/medical-o1-reasoning-SFT) with 4-bit quantization for memory-efficient training.

Idle01 year ago
Python

Diabetica: Adapting Large Language Model to Enhance Multiple Medical Tasks in Diabetes Care and Management

Idle711 year ago
Python

!image/png

Idle1.9K1 year ago
Python

HuatuoGPT-o1-72B

Idle4161 year ago

HuatuoGPT-o1-7B

Idle1.1K1 year ago

Using llama.cpp release b4404 for quantization.

Idle2.4K1 year ago
Idle321 year ago

# MMedS-Llama3 💻Github Repo 🖨️arXiv Paper

Idle9481 year ago
Python

HuatuoGPT-o1-8B

Idle1.5K1 year ago

### Welcome to Nidum! At Nidum, we believe in pushing the boundaries of innovation by providing advanced and unrestricted AI models for every application. Dive into our world of possibilities and experience the freedom of Nidum-Llama-3.2-3B-Uncensored, tailored to meet diverse needs with…

Idle4.3K1 year ago
Python

# Model Card for Model ID More code details can be found at Github: https://github.com/Incredible88/BioMistral-Clinical-7B ## How to use

Idle181 year ago

Welcome to the repository for Nidum-Limitless-Gemma-2B-GGUF, an advanced language model that provides unrestricted and versatile responses across a wide range of topics. This version is designed for maximum flexibility, allowing you to run it on both CPU and GPU.

Idle2.4K1 year ago

We identified and fixed an issue related to a wrong permutation of some projections, which affects generation quality. To use the new model revision, please load as follows:

Idle2.8K1 year ago
Python

This model aims to be a base template for new models. It has been generated using this raw template.

Idle1291 year ago
Python

> [!IMPORTANT] > Better using New version of ChemLLM! > AI4Chem/ChemLLM-7B-Chat-1.5-DPO or AI4Chem/ChemLLM-7B-Chat-1.5-SFT

Idle1.1K1 year ago
Python

Chemma-2B is a continually pretrained gemma-2b model for organic molecules. It is pretrained on 40B tokens covering 110M+ molecules from PubChem as well as their chemical properties (molecular weight, synthetic accessibility score, drug-likeness etc.) and similarities (Tanimoto distance between…

Idle471 year ago
Python

The Mistral-DNA-v1-138M-bacteria Large Language Model (LLM) is a pretrained generative DNA text model with 17.31M parameters x 8 experts = 138.5M parameters. It is derived from Mistral-7B-v0.1 model, which was simplified for DNA: the number of layers and the hidden size were reduced.

Stale162 years ago
Python