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A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

8 of 5,893 resources

cyvcf2

Tools
Tool

Cython + HTSlib == fast VCF parsing; even faster parsing than pyVCF.

Active4433 weeks ago
Cython
MIT

cyvcf

Tools
Tool

A port of [pyVCF](https://github.com/jamescasbon/PyVCF) using Cython for speed.

polars-bio

Tools
Tool

Python library for blazing-fast genomic interval operations and genomic file formats I/O on Polars DataFrames

pyBedTools

Tools
Tool

Python wrapper for [bedtools](https://github.com/arq5x/bedtools).

pyfaidx

Tools
Tool

Pythonic access to FASTA files.

pysam

Tools
Tool

Python wrapper for [samtools](https://github.com/samtools/samtools).

pyVCF

Tools
Tool

A VCF Parser for Python.

Scanpy

Tools
Tool

Scalable toolkit for analyzing single-cell gene expression data, including preprocessing, visualization, clustering, and trajectory inference.

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