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A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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17 of 7,765 resources matching “protein”
General-purpose RNA language model with 650M parameters pretrained on
High-performance open-source proteomics database search engine written in
Transformer encoder-decoder for de novo peptide sequencing from tandem
protein-coding sequences from over 20,000 species, enabling cross
protein, structure, and single-cell tasks with reproducible CLIs and pretrained
protein embeddings and bidirectional transformer architecture (Cantini Lab, 148+ stars
protein-language-model-informed token space; enables zero-shot cell
Long-context generative genomic foundation model using 6-mer tokenization
First architecture deeply integrating a DNA foundation model with an
acid and protein language, integrating DNA/RNA/protein sequences (Nature Machine Intelligence 2025)
Hybrid deep learning and alignment-based tool for identifying viruses
Family of generative single-cell foundation models (TF-Metazoa, TF
protein language models, enabling programmable CRISPR-Cas nucleases for synthetic
protein abundance data for CITE-seq, spatial CITE-seq, REAP
RNA foundation model trained on millions of RNA sequences for
Generative pre-training for genomics
Google DeepMind's AlphaFold-derived classifier for proteome-wide missense