Find open-source science resources

A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

2,419 of 6,573 resources

Showing 51100

A vocabulary describing subjects taught in German primary and secondary school (not university/hochschulen), such as German, math, and art.

Active41 month ago
CC0-1.0

The Data Privacy Vocabulary provides an ontology (classes and properties) and taxonomies of concepts to represent information regarding how personal data is processed in the form of an ontology or a knowledge graph.

Active791 month ago
HTML
NOASSERTION
Active1361 month ago
Ruby
MIT

Ontologies that aim to provide semantic specifications for units of measure, quantity kind, dimensions and data types.

Active1581 month ago
HTML
NOASSERTION
Active101 month ago
Makefile
CC-BY-4.0

An ontology about scholarship

Active161 month ago
Unlicense
Active6131 month ago
Shell
MIT
Active1491 month ago
JavaScript

An issue on the UBERON GitHub Issue tracker

Active1581 month ago
Emacs Lisp
NOASSERTION

A list of values for class levels. Created in the context of the OpenEduHub

Active21 month ago
CC0-1.0

GO Rules are a way of documenting the set of filters and reports that should apply to GAF annotation data. Some rules are expressed as SPARQL on a triplestore, some are code in the GAF parsing software, ontobio.

Active491 month ago
JavaScript
BSD-3-Clause

IDPO is used to describe structural aspects of an IDP/IDR, self-functions and functions directly associated with their disordered state. GO is used to describe functional aspects of an IDP/IDR.

Active71 month ago
Makefile
CC-BY-4.0

A classification of subjects in Hochschule (universities of applied sciences)

Active41 month ago
Python

A controlled vocbualry of higher education resource types

Active11 month ago

The EVORAO Ontology provides a structured and harmonized vocabulary for describing shareable pathogens as characterized biological materials, along with their derived products and associated services, organized into collections. Developed within the EVORA project, it supports consistent metadata annotation across research infrastructures, promoting findability, accessibility, interoperability, and reusability (FAIR). By aligning with relevant standards and ontologies, EVORAO facilitates cross-domain collaboration, integration, and sharing of pathogenic resources and services to enhance pandemic preparedness and response. While initially focused on virology, EVORAO is designed to be extensible and also supports metadata harmonization for other pathogens. [from repository]

Active01 month ago
Python
CC0-1.0

PomBase manages gene and phenotype data related to Fission Yeast. FYECO contains experimental conditions relevant to fission yeast biology. The FYECO namespace shows up in data ingests from PomBase.

Active161 month ago
Makefile
CC-BY-4.0

The Ontology for Biomarkers of Clinical Interest (OBCI) formally defines biomarkers for diseases, phenotypes, and effects.

Active11 month ago
CC-BY-4.0

An international LGBTQ+ linked data vocabulary

Active121 month ago
HTML

The FRBR-aligned Bibliographic Ontology (FaBiO) is an ontology for describing entities that are published or potentially publishable (e.g., journal articles, conference papers, books), and that contain or are referred to by bibliographic references.

Active101 month ago

An ontology that enables the metadata properties of the DataCite Metadata Schema Specification (i.e., a list of metadata properties for the accurate and consistent identification of a resource for citation and retrieval purposes) to be described in RDF.

Active41 month ago
XSLT

An ontology that provides a structured vocabulary written of document components, both structural (e.g., block, inline, paragraph, section, chapter) and rhetorical (e.g., introduction, discussion, acknowledgements, reference list, figure, appendix).

Active181 month ago

An ontology that enables characterization of the nature or type of citations, both factually and rhetorically.

Active161 month ago

The Ontology of Immune Epitopes (ONTIE) is an effort to represent terms in the immunology domain in a formal ontology with the specific goal of representing experiments that identify and characterize immune epitopes.

Active132 months ago
Python

NFDI-MatWerk aims to establish a digital infrastructure for Materials Science and Engineering (MSE), fostering improved data sharing and collaboration. This repository provides comprehensive documentation for NFDI MatWerk Ontology (MWO) v3.0.0, a foundational framework designed to structure research data and enhance interoperability within the MSE community. To ensure compliance with top-level ontology standards, MWO v3.0.0 is aligned with the Basic Formal Ontology (BFO) and incorporates the modular approach of the NFDIcore mid-level ontology, enriching metadata through standardized classes and properties. The mwo addresses key aspects of MSE research data, including the NFDI-MatWerk community structure, covering task areas, infrastructure use cases, projects, researchers, and organizations. It also describes essential NFDI resources, such as software, workflows, ontologies, publications, datasets, metadata schemas, instruments, facilities, and educational materials. Additionally, mwo represents NFDI-MatWerk services, academic events, courses, and international collaborations. As the foundation for the MSE Knowledge Graph, mwo facilitates efficient data integration and retrieval, promoting collaboration and knowledge representation across MSE domains. This digital transformation enhances data discoverability, reusability, and accelerates scientific exchange, innovation, and discoveries by optimizing research data management and accessibility. (from repository)

Active12 months ago
Makefile
Active13.6K2 months ago
Ruby
MIT

The submission-centric metadata schema for the German Human Genome-Phenome Archive (GHGA).

Active162 months ago
Python
Apache-2.0

DCAT-AP is a DCAT profile for sharing information about Catalogues containing Datasets and Data Services descriptions in Europe, under maintenance by the SEMIC action, Interoperable Europe. This Application Profile provides a minimal common basis within Europe to share Datasets and Data Services cross-border and cross-domain. [from homepage]

Active1142 months ago
HTML
CC-BY-4.0
Active42 months ago
CC-BY-SA-4.0
Active62 months ago
Python

Terms for genes, experimental factors, and cell lines used by the [Gemma platform](https://gemma.msl.ubc.ca/home.html) for differential gene expression analysis.

Active12 months ago
Python

Ontology, part of the SI Reference Point, covering measurement units (SI base units and SI units with special names) and prefixes.

Active182 months ago
NOASSERTION

The Semantic Mapping Vocabulary provides and defines terms used for creating and maintaining semantic mappings, in particular mapping metadata.

Active162 months ago
Makefile

SSSOM is a Simple Standard for Sharing Ontological Mappings, providing - a TSV-based representation for ontology term mappings - a comprehensive set of standard metadata elements to describe mappings and - a standard translation between the TSV and the Web Ontology Language (OWL). Most metadata elements, such as "sssom:mapping_justification" are defined in the sssom namespace.

Active2052 months ago
Python
BSD-3-Clause

A vocabulary for describing semantic assets, defined as highly reusable metadata (e.g. XML1 schemata, generic data models) and reference data (e.g. code lists, taxonomies, dictionaries, vocabularies).

Active23 months ago
HTML

A representation of variables appearing in models in the environmental research space.

Active53 months ago
HTML

The Chromosome Ontology is an automatically derived ontology of chromosomes and chromosome parts.

Active153 months ago
Python

The Simplified Upper Level Ontology (SULO) is ontology with a minimal set of classes and relations to guide the development of a personal health knowledge graph. [from homepage]

Active193 months ago
Python
MIT

An ontology demonstrating rich ontology for rubber extrusion.

Active03 months ago
HTML
Active83 months ago
Python
Active183 months ago
NOASSERTION

Ontology describing a controlled vocabulary for taxon ranks.

Active83 months ago
Web Ontology Language
Active13 months ago
Active683 months ago
HTML

A mid-level ontology for representing metadata related to NFDI resources, including individuals, organizations, projects, data portals, and more

Active213 months ago
Makefile
CC0-1.0

An extension of Schema.org to annotate metadata on software projects

Active3514 months ago
Python
Apache-2.0
Active04 months ago

An issue on the Vertebrate Breed Ontology GitHub issue tracker

Active154 months ago
Makefile

The EMI ontology is used to structure spectrum annotation provenance by reusing the PROV-O ontology (a W3C recommendation) and sample and observation data by applying the SOSA ontology. EMI reuses the SOSA ontology as a data schema for struturing the Sample and Observation data. SOSA (Sensor, Observation, Sample, and Actuator) is a subset of SSN (Semantic Sensor Network Ontology) that is a W3C recommendation. [from homepage]

Active64 months ago
Python
MIT

The Context and Measurement Ontology (COMO) contains ontological terms to describe the context for various types of experimental data and measurements. It is useful in its current state for several different environmental microbiology projects. This ontology is used in multiple CORAL (Contextual Ontology-based Repository Analysis Library) deployments.

Active84 months ago
Python
AGPL-3.0