Find open-source science resources
A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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143 of 7,765 resources matching “protein”
Showing 1–50
protein-encoded genomic data. It identifies orthologous genes using HMM profiles
OpenOncology is an open-source platform for precision oncology, designed
Processes 96-well plate absorbance data through blank subtraction, regression
protein representation learning, providing standardized interfaces for pre-training and diverse
Plans geometric serial dilution series for molecular biology and biochemistry
protein entries, plus dilution and ligation calculation modes through one API-backed
Performs laboratory unit conversions across molarity, OD600 cell density, C
DiscrimAlign is a statistical model designed for discriminative learning of
NovoTax is an end-to-end pipeline designed to identify
Workflow optimized for the analysis of rare diseases, designed to
Provides a consistent interface for downloading, storing, and accessing immune
search and clustering suite for protein and nucleotide sequence sets.
Comprehensive collection of 125+ ready-to-use scientific skill modules
protein structures, multiple sequence alignments, and phylogenies alongside nucleotide-level
RFantibody is a pipeline for structure-based de novo antibody
Open-source hybrid scientific research agent and workbench replicating Claude
AlloPipe is a bioinformatics tool designed to identify candidate minor
Autonomous AI scientist research
Free, open-source desktop AI research assistant that runs locally
Novabrowse is an interactive framework for high-resolution synteny analysis
Turn any AI agent into an AI Scientist. The #1
Self-evolving AI research colleague built on OpenClaw with 285
High-performance open-source proteomics database search engine written in
protein design framework integrating Boltz, AlphaFold2, OpenFold3, ProteinMPNN, and ESM via JAX-based
representations of protein and RNA structures, and biological interaction networks.
entities, diseases and phenotypes, genes and proteins and many others.
PyTorch framework for training neural network interatomic potentials with the
Translate differential transcript usage results into discrete splice events.
protein language-model features, orthology, curated knowledge, protein association networks
protein interaction networks, and scientific knowledge graph learning (23.7k+ stars
Biomedical Model Context Protocol (MCP) server unifying literature search across
protein conformational changes and characterize ligand dissociation pathways. It enables
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
compareMS2 is a tool for comparing sets of (tandem) mass
proteins) using the hypergeometric distribution. Tailored for speed, this package
StaphScope is an automated, locally-executable computational pipeline designed specifically
Curated, accuracy-first collection of benchmarks for evaluating LLMs on
protein binder design pipeline using AlphaFold2 backpropagation, MPNN, and PyRosetta
AcinetoScope is an automated, comprehensive bioinformatics pipeline designed specifically for
AlphaFold/ESMFold accessible implementation with AF3 JSON export, database updates
protein equilibrium conformations 100,000× faster than MD simulations, predicting
Benchmark evaluating AI agents for end-to-end automated research
Curated library of 550+ medical research agent skills spanning evidence
MetaTracer is a nucleotide alignment-based framework that analyzes complex
Curated scientific LLM papers (260+ models)
protein identifiers (TXT, CSV, TSV, XLSX). It maps approved symbols
PhyloProfile is a tool for exploring complex phylogenetic profiles. Phylogenetic
protein folding model using only general-purpose transformer layers, scaled