Find open-source science resources
A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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63 of 6,592 resources
Showing 51–63
Content-Aware Image Restoration for Cryo-Transmission Electron Microscopy Data
Molecular descriptor calculator based on [RDKit](http://www.rdkit.org/).
Psi4-based reference implementations and Jupyter notebook-based tutorials for foundational quantum chemistry methods.
Graph Networks as a Universal Machine Learning Framework for Molecules and Crystals.
This package offers an interface to NDEx servers, e.g. the public server at http://ndexbio.org/. It can retrieve and save networks via the API. Networks are offered as RCX object and as igraph representation.
Open Drug Discovery Toolkit, a modular and comprehensive toolkit for use in cheminformatics, molecular modeling etc.
Vector representations of molecular substructures.
Jupyter Widgets to interact with molecular datasets.
Suffix Array Kernel Smoothing (see https://academic.oup.com/bioinformatics/article-abstract/35/20/3944/5418797), or SArKS, identifies sequence motifs whose presence correlates with numeric scores (such as differential expression statistics) assigned to the sequences (such as gene promoters). SArKS smooths over sequence similarity, quantified by location within a suffix array based on the full set of input sequences. A second round of smoothing over spatial proximity within sequences reveals multi-motif domains. Discovered motifs can then be merged or extended based on adjacency within MMDs. False positive rates are estimated and controlled by permutation testing.
Spike detection and clustering-based spike sorting.
Workflow standard developed by the Broad.
An ontology that represents the basic knowledge of physical, chemical and functional characteristics of nanotechnology as used in cancer diagnosis and therapy.