centroFlye

Assembling Centromeres with Long Error-Prone Reads | An algorithm for centromere assembly using long error-prone reads | Scripts for analyses and figures for centroFlye manuscript | centroFlye is an algorithm for centromere assembly using long error-prone reads. Currently it supports assembly of a human centromere X. Here we show how to apply it for the centromere X of the CHM13hTERT human cell line | Results_and_several_Appendices.ipynb replicates Results and Appendices: Analysis of centromeric reads that do not map to centroFlye assembly, Hanging index test, and Breakpoint test