Open Science Index

Find open-source science resources

A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

Filters

Health

Active112
Idle24
Stale7
Archived3
(None)5

Domain

Protein & Drug Discovery17
Autonomous Research Systems (2023-2025 Breakthroughs)14
Medical AI & Clinical Applications14
Genomics & Bioinformatics12
Climate Modeling6
Domain-Specific Research Agents4
General Science Models4
High-Performance Document Processing4
Specialized Frameworks4
Computational Pathology & Digital Pathology3
Machine Learning3
Scientific Literature RAG & Analysis3
(None)5

Language(1)

Python151
Jupyter Notebook20
HTML15
R11
TypeScript7
C++4
Shell4
Java3
Lean2
Rust2
Assembly1
C#1
(None)15

License(1)

MIT221
Apache-2.0151
NOASSERTION83
BSD-3-Clause35
GPL-3.026
CC-BY-NC-ND-4.012
CC-BY-4.09
CC0-1.07
LGPL-3.07
Proprietary7
AGPL-3.05
BSD-2-Clause4
(None)453

Source

github146
awesome-ai-for-science118
bio.tools17
bioregistry7
awesome-python-chemistry5
awesome-bioinformatics3
awesome-cheminformatics3
1

Type

Software tool144
Database7

Filters

Health

Active112
Idle24
Stale7
Archived3
(None)5

Domain

Protein & Drug Discovery17
Autonomous Research Systems (2023-2025 Breakthroughs)14
Medical AI & Clinical Applications14
Genomics & Bioinformatics12
Climate Modeling6
Domain-Specific Research Agents4
General Science Models4
High-Performance Document Processing4
Specialized Frameworks4
Computational Pathology & Digital Pathology3
Machine Learning3
Scientific Literature RAG & Analysis3
(None)5

Language(1)

Python151
Jupyter Notebook20
HTML15
R11
TypeScript7
C++4
Shell4
Java3
Lean2
Rust2
Assembly1
C#1
(None)15

License(1)

MIT221
Apache-2.0151
NOASSERTION83
BSD-3-Clause35
GPL-3.026
CC-BY-NC-ND-4.012
CC-BY-4.09
CC0-1.07
LGPL-3.07
Proprietary7
AGPL-3.05
BSD-2-Clause4
(None)453

Source

github146
awesome-ai-for-science118
bio.tools17
bioregistry7
awesome-python-chemistry5
awesome-bioinformatics3
awesome-cheminformatics3
1

Type

Software tool144
Database7

151 of 6,584 resources

Showing 151–151

BIGR xnattools

xnattools is a python package with a set of modules for performing various operations on data stored in XNAT servers. The main purpose is to provide one standardized platform for running operations on XNAT servers. The package currently contains four tools that use this platform: dicom to nifty conversion, thumbnail generation from dicom, DICOM header data collection, in bulk downloading of a project.

1
2
3
4

Next →

Submit a resource bio.tools Awesome Bioinformatics