Find open-source science resources

A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

8 of 6,573 resources

Aims to provide useful high-level interfaces that make ML for materials science as easy as possible.

Active4644 weeks ago
Jupyter Notebook
BSD-3-Clause

15TB collection of 16 large-scale numerical simulation datasets spanning fluid dynamics, MHD, astrophysics, biological systems, and acoustic scattering, with unified PyTorch dataloaders and benchmarks for training foundation models on physical sciences (Polymathic AI, NeurIPS 2024)

Active4.3K1 month ago
Jupyter Notebook
BSD-3-Clause

Foundation model jointly trained on single-cell and spatial transcriptomics data, enabling unified representation learning across cellular and tissue spatial contexts for cell type prediction, spatial domain inference, and cross-modal integration (theislab, bioRxiv 2024, 164+ stars)

Idle1709 months ago
Jupyter Notebook
BSD-3-Clause

State-specific protein-ligand complex structure prediction with a multi-scale deep generative model, enabling conformational state-aware modeling of molecular interactions (329+ stars, 2024)

Idle33310 months ago
Jupyter Notebook
BSD-3-Clause

Library with several compositional and structural material descriptors, along with a few pre-trained neural network models of material properties.

Stale1582 years ago
Jupyter Notebook
BSD-3-Clause

A Deep Learning Library for Compound and Protein Modeling DTI, Drug Property, PPI, DDI, Protein Function Prediction.

Stale1.2K2 years ago
Jupyter Notebook
BSD-3-Clause

Psi4-based reference implementations and Jupyter notebook-based tutorials for foundational quantum chemistry methods.

Stale3992 years ago
Jupyter Notebook
BSD-3-Clause

Graph Networks as a Universal Machine Learning Framework for Molecules and Crystals.

Archived5583 years ago
Jupyter Notebook
BSD-3-Clause