OpSeF

Open source Python framework for collaborative instance segmentation of bioimages. Various pre-trained deep-learning models for the segmentation of biomedical images have been made available to users with little to no knowledge in machine learning. However, testing these tools individually is tedious and success is uncertain. Here, we present OpSeF, a Python framework for deep-learning based semantic segmentation that was developed to promote the collaboration of biomedical user with experienced image-analysts.