Find open-source science resources
A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
Filters
Health
Domain
Language(1)
License
Source(1)
Type
8 of 5,893 resources
A quality control tool for high throughput sequence data.
Vitro is a full stack framework for building semantic web applications. It is not domain specific.
Genetic variant annotation and effect prediction toolbox.
GRIDSS: the Genomic Rearrangement IDentification Software Suite.
Suffix Array Kernel Smoothing (see https://academic.oup.com/bioinformatics/article-abstract/35/20/3944/5418797), or SArKS, identifies sequence motifs whose presence correlates with numeric scores (such as differential expression statistics) assigned to the sequences (such as gene promoters). SArKS smooths over sequence similarity, quantified by location within a suffix array based on the full set of input sequences. A second round of smoothing over spatial proximity within sequences reveals multi-motif domains. Discovered motifs can then be merged or extended based on adjacency within MMDs. False positive rates are estimated and controlled by permutation testing.
Natural Product-likeness calculator v-2.1 : calculates natural product-likeness of small molecules based on open-data of natural products.