GATK
github.com/broadgsa/gatkVariant Discovery in High-Throughput Sequencing Data.
Sourced from
- Awesome Bioinformatics — github.com/broadgsa/gatk
Related resources
Deep learning-based variant caller
samtools/bcftools are a suite of tools for manipulating NGS data and can be used to call variants.
A polymorphic bayesian genotyping model with wide applicability.
Bayesian haplotype-based polymorphism discovery and genotyping.