SequenceMatrix

Hand-curated knowledge base of mTOR biology, linking 360+ primary studies to genes, drugs, diseases, pathways and outcomes. Every study carries a code for the kind of study behind it - synthesis of human data, human, animal, molecular or review - which names the system a finding was established in rather than ranking it, alongside open research questions.

Generalist deep learning algorithm for cell and nucleus segmentation across diverse image types, with human-in-the-loop training (2.0) and one-click image restoration (3.0), 70K+ training objects (Nature Methods 2021/2022/2025)

Scalable genomic analysis.

JCVI is a versatile toolkit for comparative genomics analysis. It is a collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics.

Using single-cell RNA-Seq expression to visualize CNV in cells.

Java framework for processing biological data.