Find open-source science resources

A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

23 of 5,893 resources

Ontologies that aim to provide semantic specifications for units of measure, quantity kind, dimensions and data types.

Active1541 week ago
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NOASSERTION

Identifiers in the GTN correspond to training materials in various formats (markdown, slides, video). The users can apply learned concepts directly within the framework via galaxy workflows.

Active3652 weeks ago
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CC-BY-4.0

Bioschemas aims to improve the Findability on the Web of life sciences resources such as datasets, software, and training materials. It does this by encouraging people in the life sciences to use Schema.org markup in their websites so that they are indexable by search engines and other services. Bioschemas encourages the consistent use of markup to ease the consumption of the contained markup across many sites. This structured information then makes it easier to discover, collate, and analyse distributed resources. [from BioSchemas.org]

Active632 weeks ago
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The Bioregistry is integrative meta-registry of biological databases, ontologies, and nomenclatures that is backed by an open database.

Active1432 weeks ago
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CC0-1.0

A representation of variables appearing in models in the environmental research space.

Active42 weeks ago
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A vocabulary for describing semantic assets, defined as highly reusable metadata (e.g. XML1 schemata, generic data models) and reference data (e.g. code lists, taxonomies, dictionaries, vocabularies).

Active23 weeks ago
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CC-BY-4.0

BioTools is a registry of databases and software with tools, services, and workflows for biological and biomedical research.

Active873 weeks ago
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CC-BY-4.0

An Apache-based persistent URL (PURL) service

Active51 month ago
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MIT
Active691 month ago
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An international LGBTQ+ linked data vocabulary

Active121 month ago
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The Generative Artificial Intelligence Delegation Taxonomy (GAIDeT) assigns identifiers to contributor roles as an extension to the Contributor Roles Taxonomy (CRediT) to support promoting transparency and accountability in academic publishing when AI contribtors are involved in research. It is operationalized in the [GAIDeT Declaration Generator](https://panbibliotekar.github.io/gaidet-declaration/), an interactive tool for researchers to disclose the delegation of tasks to generative AI (GAI) tools in accordance with the GAIDeT taxonomy.

Active73 months ago
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NOASSERTION

CCSO is an educational ontology acting as a data model for concepts and entities within an academic setting, enabling also the annotation of potentially available resources. The ontology aims to conceptualize educational entities within Curriculum and Syllabus with appropriate coverage and quality, in order to support rich services on top for improving curriculum management and automatically enabling syllabus semantic processes. (from homepage)

Idle06 months ago
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GPL-3.0

HOSO is an ontology of informational entities and processes related to healthcare organizations and services.

Idle08 months ago
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NOASSERTION

An ontology of information entities about an individual

Idle09 months ago
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Idle19 months ago
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Unified Code for Units of Measure (UCUM) is a code system intended to include all units of measures being contemporarily used in international science, engineering, and business.

Idle9811 months ago
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NOASSERTION

A concept scheme that defines the types of relationships between a learning resource and a node in an educational framework.

Idle261 year ago
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BioCompute is shorthand for the IEEE 2791-2020 standard for Bioinformatics Analyses Generated by High-Throughput Sequencing (HTS) to facilitate communication. This pipeline documentation approach has been adopted by a few FDA centers. The goal is to ease the communication burdens between research centers, organizations, and industries. This web portal allows users to build a BioCompute Objects through the interface in a human and machine readable format.

Idle171 year ago
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Stale624 years ago
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TogoID is an ID conversion service implementing unique features with an intuitive web interface and an API for programmatic access. TogoID supports datasets from various biological categories such as gene, protein, chemical compound, pathway, disease, etc. TogoID users can perform exploratory multistep conversions to find a path among IDs. To guide the interpretation of biological meanings in the conversions, we crafted an ontology that defines the semantics of the dataset relations. (from https://togoid.dbcls.jp/)

Stale27 years ago
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The Shape Expressions (ShEx) language describes RDF nodes and graph structures. A node constraint describes an RDF node (IRI, blank node or literal) and a shape describes the triples involving nodes in an RDF graph. These descriptions identify predicates and their associated cardinalities and datatypes. ShEx shapes can be used to communicate data structures associated with some process or interface, generate or validate data, or drive user interfaces.

Stale17 years ago
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