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Cross-domain directory aggregating tools, AI models, datasets, and research resources from bio.tools, Bioconductor, HuggingFace, curated GitHub awesome-lists, and more.

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First architecture deeply integrating a DNA foundation model with an LLM for multimodal biological reasoning, achieving 98% accuracy on KEGG disease pathway prediction and 15%+ average gains on variant effect prediction with interpretable step-by-step reasoning traces (bowang-lab, 390+ stars)

3902 months ago
Jupyter Notebook
Apache-2.0

Transformer encoder-decoder for de novo peptide sequencing from tandem mass spectrometry, translating MS/MS spectra directly to peptide sequences without reference databases, enabling identification of novel peptides for immunopeptidomics, antibody repertoires, and metaproteomes (Noble Lab UW, Nature Communications 2024)

1874 days ago
Python
Apache-2.0