Find open-source science resources

A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

12 of 7,050 resources

Utilities for working with CSV/Tab-delimited files.

Active6.4K2 months ago
Python
MIT

Another cross-platform, efficient, practical and pretty CSV/TSV toolkit.

Active1.2K2 months ago
Go
MIT

Modular and universal bioinformatics, Bionode provides pipeable UNIX command line tools and JavaScript APIs for bioinformatics analysis workflows.

Archived3134 months ago
JavaScript
MIT

Fast FASTQ filtering by matching reads against one or more regex patterns.

Active605 months ago
Rust
MIT

Sort genomic files according to a specified order.

Idle3611 months ago
Go
MIT

Write-once-read-many table for large datasets.

Stale273 years ago
Python
LGPL-3.0

Git repo of useful single line commands.

Stale2K3 years ago

Easily submitting PBS jobs with script template. Multiple input files supported.

Stale293 years ago
Python
MIT

Syntax Highlighting for Computational Biology file formats (SAM, VCF, GTF, FASTA, PDB, etc...) in vim/less/gedit/sublime.

Stale2743 years ago
Shell
GPL-3.0

Create an index on a compressed text file.

Stale6583 years ago
C
BSD-2-Clause

Table file index.

Archived925 years ago
C

A wee tool for random access into BGZF files.

Stale868 years ago
C
MIT