grepq
github.com/rbfinch/grepqFast FASTQ filtering by matching reads against one or more regex patterns.
Sourced from
- Awesome Bioinformatics — github.com/rbfinch/grepq
Related resources
Utilities for working with CSV/Tab-delimited files.
Syntax Highlighting for Computational Biology file formats (SAM, VCF, GTF, FASTA, PDB, etc...) in vim/less/gedit/sublime.
Sort genomic files according to a specified order.
Easily submitting PBS jobs with script template. Multiple input files supported.
Git repo of useful single line commands.