xgt
github.com/ebedthan/xgtxgt is a command-line tool for programmatic access to the GTDB REST API. It provides four subcommands: search (genome queries with pagination), genome (cards, metadata, taxonomic history), taxon (lineage and genome set retrieval), and diff (per-rank taxonomic comparison between any two GTDB releases). All subcommands support batch input, JSON/CSV/TSV output, file splitting, and automatic retry. Implemented in Rust as a self-contained binary with no runtime dependencies.
Sourced from
- bio.tools — xgt
- GitHub — github.com/ebedthan/xgt
Related resources
Deep learning-based variant caller
JCVI is a versatile toolkit for comparative genomics analysis. It is a collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics.
A haplotype-resolved assembler for accurate Hifi reads.
Analyze and visualize Mutation Annotation Format (MAF) files from large scale sequencing studies. This package provides various functions to perform most commonly used analyses in cancer genomics and to create feature rich customizable visualzations with minimal effort.
Cython + HTSlib == fast VCF parsing; even faster parsing than pyVCF.
A polymorphic bayesian genotyping model with wide applicability.