SeqBench
https://bio.tools/seqbench-onlineSeqBench is a free collection of browser-based tools for working with DNA, RNA and protein sequences, including reverse complement, translation, ORF finding, GC content, primer melting temperature, restriction site analysis, codon optimization, pairwise alignment and plasmid visualization. All computation runs client-side in the browser, so input sequences are never uploaded to a server.
Sourced from
- bio.tools — seqbench-online
Related resources
Git repo for Bio::DB::HTS module on CPAN, providing Perl links into HTSlib
RBPBench is a multi-function tool to evaluate CLIP-seq and other related genomic region data using a comprehensive collection of known RNA-binding protein (RBP) binding motifs. RBPBench can be used for a variety of purposes, from RBP motif search (database or user-supplied RBP motifs) in genomic regions, over motif enrichment and co-occurrence analysis, in-depth comparisons over multiple datasets via sequence and genomic annotation statistics, to benchmarking CLIP-seq peak caller methods as well as comparisons across cell types and CLIP-seq protocols. RBPBench supports both sequence and structure motifs, as well as regular expressions (sequence and structure patterns). Moreover, users can easily provide their own motif collections.
RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.