Find open-source science resources
A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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6 of 5,893 resources
FlowVision is offline flow cytometry analysis software for Windows and macOS. It supports FCS 2.0, 3.0, 3.1 and 3.2 file formats, polygon/rectangle/ellipse/quadrant gating with auto-fit (snap to cluster), spillover compensation, biexponential and hyperlog scales, MFI statistics (median, geometric mean, CV%), multi-file batch analysis with per-file gate overrides, and hierarchical gating. Spectral unmixing supports linear, NNLS, and Poisson-weighted least squares algorithms, with autofluorescence extraction and spillover spreading matrix. UMAP dimensionality reduction with reproducible seed and landmark mode for high-parameter panels. Imports FlowJo .wsp (compensation matrix) and exports gates to FlowJo .wsp and Gating-ML 2.0 (ISAC open standard) for interoperability with FlowJo, R/flowWorkspace/CytoML, and FCS Express.
A tool that checks the clinical metadata quality (validity, completeness), the integrity between images and clinical metadata provided as well as their accuracy, the de-identification protocol applied, and existence of annotation together with the consistency between the images and the annotation files and informs the user on corrective actions prior to data upload.
Miniconda is a minimal Python distribution that includes the Conda package and environment manager plus only essential dependencies. It provides a lightweight way to create isolated environments and install Python packages as needed, without the large preinstalled package set of Anaconda.
ekokrati computes habitat connectivity metrics (PC, IIC, EC(PC), dPC and its decomposition into intra-patch, flux and connector components) for habitat patch networks. Users upload polygon data as GeoPackage or shapefile, set species-specific dispersal parameters, and receive patch importance scores and landscape-level indices. Designed for conservation planners, landscape ecologists and environmental consultants. No installation required.
Verbex is a private, on-device Voice-to-ELN iOS app for scientists. It helps researchers capture experiment notes by voice as work happens, organize those notes into scientific sections, and prepare clean, reviewable, ELN-ready scientific records.
Mol Biology Tools is a free browser-based collection of molecular biology utilities for routine sequence analysis, primer design, Sanger sequencing primer planning, cloning setup, and wet-lab calculations. The site includes tools for PCR primer design, Sanger primer design and primer walking, primer binding checks, restriction site analysis, reverse complement generation, ORF and protein translation, codon optimization, ligation calculations, molarity calculations, dilution calculations, and multi-solute solution recipe preparation. The tools run in the browser and are intended for quick experimental planning without requiring logins or server-side sequence upload.