DaisyChainAI/daisychain-genomics

modelid = "DuanYi/R3LMHepG2"

The Nucleotide Transformers are a collection of foundational language models that were pre-trained on DNA sequences from whole-genomes. Compared to other approaches, our models do not only integrate information from single reference genomes, but leverage DNA sequences from over 3,200 diverse human…

The plant DNA large language models (LLMs) contain a series of foundation models based on different model architectures, which are pre-trained on various plant reference genomes. All the models have a comparable model size between 90 MB and 150 MB, BPE tokenizer is used for tokenization and 8000…

## Important Notice If you are using GENERator for sequence generation, please ensure that the length of each input sequence is a multiple of 6. This can be achieved by either: 1. Padding the sequence on the left with 'A' (left padding); 2. Truncating the sequence from the left (left truncation).

This model aims to be a base template for new models. It has been generated using this raw template.

Pretrained LDARNet (~110M params) with learnable DNA tokenization (dynamic chunking + BiMamba-2).