Bio-TraDIS (Transposon Directed Insertion-Site Sequencing)
github.com/sanger-pathogens/bio-tradisBio-TraDIS is a bioinformatics workflow designed to identify genes required for bacterial adhesion to host cells. It utilizes data derived from Transposon Directed Insertion-Site Sequencing (TraDIS) and microfluidic infection assays.
Sourced from
- GitHub — github.com/sanger-pathogens/bio-tradis
Related resources
Finds SNP sites from a multi-FASTA alignment file.
Circlator is a tool to circularize genome assemblies. It will attempt to identify each circular sequence and output a linearised version of it. It does this by assembling all reads that map to contig ends and comparing the resulting contigs with the input assembly.
AntiPan is a comprehensive command-line pipeline designed to identify high-potential protein antigens for subunit vaccine design against multidrug-resistant pathogens, particularly Staphylococcus aureus.
Analyze and visualize Mutation Annotation Format (MAF) files from large scale sequencing studies. This package provides various functions to perform most commonly used analyses in cancer genomics and to create feature rich customizable visualzations with minimal effort.
Sequence manipulation toolkit for FASTA/FASTQ files written in Nim.
Programmatically access the NIH / NCI Genomic Data Commons RESTful service.