SeqFu
Sequence manipulation toolkit for FASTA/FASTQ files written in Nim.
README
SeqFu A general-purpose program to manipulate and parse information from FASTA/FASTQ files, supporting gzipped input files. Includes functions to interleave and de-interleave FASTQ files, to rename sequences and to count and print statistics on sequence lengths. 📦 Installation Seqfu can be easily installed via Miniconda: Build from source Building the Nim programs alone would just require a nimble build, but this would leave out some other utilities. There is a make (Makefile) building system.…
- Repository
- github.com/telatin/seqfu2
Source attribution
- GitHub — github.com/telatin/seqfu2
- Awesome Bioinformatics — github.com/telatin/seqfu2
Related resources
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data.
Programmatically access the NIH / NCI Genomic Data Commons RESTful service.
Point and click, cross platform suite for analysing and visualizing next-generation sequencing datasets.
Low- and high-level wrappers for Gemma's RESTful API. They enable access to curated expression and differential expression data from over 10,000 published studies. Gemma is a web site, database and a set of tools for the meta-analysis, re-use and sharing of genomics data, currently primarily targeted at the analysis of gene expression profiles.
This package provides functions for fitting MOSAiCS and MOSAiCS-HMM, a statistical framework to analyze one-sample or two-sample ChIP-seq data of transcription factor binding and histone modification.
Provides functionality for producing geometric representations of protein and RNA structures, and biological interaction networks.