Find open-source science resources
A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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2,418 of 5,923 resources
Showing 351–400
Research and learning in agriculture, the environment and the applied life sciences
One of the 23 stages of embryo development
Functional families of proteins, which are a subcategory of superfamilies in CATH
CBA: http://www.cba.ac.cn/ and the Shanghai Institutes for Biological Sciences (SIBS at http://www.sibs.ac.cn/) provide EBI with citation data not available in MEDLINE.
The Creative Commons Rights Expression Language (ccREL) lets you describe copyright licenses in RDF. For more information on describing licenses in RDF and attaching those descriptions to digital works, see [ccREL](https://wiki.creativecommons.org/CC_REL) in the [Creative Commons wiki](https://wiki.creativecommons.org/).
A precursor that was later replaced with the Creative Commons Rights Expression Language (ccREL)
Datasets around different cancer cell lines generated by the Broad Institute and Novartis
The ontology of Cerrado wood plant dynamics was created in order to represent the set of concepts about the dynamics, that is, changes over time of the wood vegetation structure, of Cerrado. Ccon describes the main parameters used to measure the changes, such as mortality rate and recruitment rate. The Ccon is an OWL2 ontology according to the W3C recommendations [6], developed to represent the scientific knowledge about vegetation ecology focused to describe the dynamics of wood plants in the Brazilian Cerrado Domain. This ontology will be part of the GeoLinked Data Ontology network to enrich the web of data with geospatial information of the Cerrado Biome, especially with regard the wood plant dynamics. It aims to store data and collect information about biodiversity, composition and wood plant dynamics, to manage, integrate and query data about Cerrado plant community, and search for changes in Cerrado species populations over time. An interesting example can be the possibility of data integration from different scientific studies over different locations. Once the data available on line of studies carried out in different places can be integrated, geolocated, linked with qualitative models and, finally, inferences can be performed. [from homepage]
A condensate-modulating drug
A molecular entity that condenses, e.g., in a disease, such as ATG condensate
The Code on Dental Procedures and Nomenclature (the CDT Code) assures consistency in documenting dental treatment. Note that CDT codes should look like D2150 but for some reason the ontology conversion that is reused across OBO rewrites them as CPT_000 + the four numbers without the leading D.
The Common Entity Data Standards (CEDS) Domain Entity Schema (DES) provides a hierarchy of domains, entities, categories, and elements. It is intended for use primarily by people as an index to search, map, and organize elements in a logical way. [from homepage]
A vocabulary for learning resource types
CellBank Australia collects novel cell lines, developed by Australian researchers, submits these cell lines to rigorous testing to confirm their integrity, and then distributes the cell lines to researchers throughout the world.
Cellosaurus identifeirs for publications, like Pubmed
The set of prefixes used in the Cellosaurus resource
Assigns identifiers to collections of datasets indexed by CELLxGENE. CELLxGENE is an interactive data visualization and exploration tool developed by the Chan Zuckerberg Initiative that enables researchers to analyze and share single-cell genomics datasets. It provides a user-friendly interface for biologists and computational scientists to interrogate gene expression patterns across different cell types.
Assigns identifiers to datasets indexed by CELLxGENE, such those resulting from scRNA-seq experiments