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protein products). The network is scanned using SConES, which looks

protein prediction data without requiring programming expertise. It processes .pkl, .json

Predicts whether an amino acid substitution affects protein function.

This package consolidates a comprehensive set of information measurements, encompassing

3D Equivariant Diffusion for Target-Aware Molecule Generation (ICLR2023)

protein coding genes. FGGA embodies elements of predicate logic, communication

An upgraded causal reasoning tool from Melas et al in

A Chemical Knowledge Graph and Toolkit, writting in IUPAC/SMILES/SMARTS, for

proteins) for nucleotide or protein sequences. Pipeline that screens for presence

protein-protein interactions (HP-PPIs) using structural and physicochemical descriptors

proteins, arranged such that the probability that gene products participate

protein sequence data and classify them into families and subfamilies

magrene allows the identification and analysis of graph motifs in

Large language model for science

A curated list of molecular docking software, datasets, and other

proteins at promoter regions or surveying antisense transcription over the length

protein microarray data. This package contains different data pre-processing

protein databases based on user-submitted genomic variants, splice-junctions

proteins. With this respect the huge number of experimental mass

Protein-protein interaction data is essential for omics data analysis

proteins and nucleic acids. It is designed for high-throughput

This package provides functionalities for downstream analysis, annotation and visualizaton

Package that implements the COSNet classification algorithm. The algorithm predicts

[@crazyhottommy](https://github.com/crazyhottommy)'s notes on various steps and considerations

Intra-miR-ExploreR, an integrative miRNA target prediction bioinformatics tool

An easy and fast way to visualize and profile the

protein concentrations from expression measurements of known target genes, or for ranking

An R package that tests for enrichment and depletion of

proteins. This package integrates chemical modification data generated from a host

A fast, convenient tool to identify the TSSs of miRNAs

DiffLogo is an easy-to-use tool to visualize motif

icetea (Integrating Cap Enrichment with Transcript Expression Analysis) provides functions

protein-coding transcript of a gene with or without its corresponding

Expertly curated genomics papers to get up to speed on

Peak calling for ChIP-seq data with consideration of potential

List of resources on alternative splicing including software, databases, and

isobar provides methods for preprocessing, normalization, and report generation for

predicted annotations and true annotations from a protein function predictor.

identifies transcriptional regulatory modules (TRMs) from protein-protein interaction networks.

protein-protein complex. Transient protein-protein complexes are stable in the complexed

protein-ligand docking by automatic preprocessing protocols for the protein

protein. Global properties, describing the size, shape, and chemical features

protein-ligand complexes, focusing on the interactions between protein and ligand

protein nanopores, which serve as essential molecular gateways in biological

protein structures against the AlphaFold DB (https://alphafold.ebi.ac.uk/) and TED DB (https://ted.cathdb.info

protein-ligand complexes, focusing on the interactions between protein and ligand

protein-protein or protein-ligand interfaces. Several filter options to simplify

binding sites at protein domain interfaces or within multimeric proteins.