Find open-source science resources

A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

758 of 7,765 resources matching “protein”

Showing 251–300

Gravity-bio-16B-A3B is a biology-focus midtrained model

Active2354 months ago
Python

protein aging clock that predicts chronological age from 85 unique

Active04 months ago

protein aging clock that predicts chronological age from 92 Olink

Active04 months ago

proteins, antibodies, small molecules, chemical reactions, materials, and their spatial

Active1494 months ago
Python
Apache-2.0

Molexar-10M Base is the unconditional base model for Molexar

Active154 months ago
Python

Molexar-10M Omni is the universal multi-condition model for

Active114 months ago
Python

protein target sequences. The mirnaprotpred package provides two core modules

Active14 months ago
Python
MIT

Protein Language Models (PLMs). It uses trainable subnetworks to isolate

Active74 months ago
Jupyter Notebook
MIT

> Source code, training scripts, and inference utilities for this

Active04 months ago

both molecules and proteins within a single decoder-only architecture.

Active1064 months ago
Python

This Hugging Face repository stores the official resources for RAMER

Active04 months ago

promptable and aligned protein language models for protein sequence generation.

Active1.6K4 months ago
Python

KAU-BioMedLLM is a research prototype for source-grounded biomedical

Active04 months ago
Python

GraphExperiment provides users and developers with an S4 class that

Active14 months ago
R
GPL-3.0

Cross-platform system optimizations for accelerating AlphaFold3 training with 1.73

Active774 months ago
Python
MIT

 

Active624 months ago

 

Active574 months ago

 

Active294 months ago

 

Active384 months ago

CAPHEINE is a comprehensive computational workflow that automates exploratory evolutionary

Active114 months ago
Nextflow
MIT

Learning the language of protein-protein interactions

Active1574 months ago
Python
MIT

protein structure determination from electron density with high accuracy (3DEM/EMBL

Active1774 months ago
Python
MIT

protein from a single anchor input, with optional sequence-specific

Active14 months ago
Python

Mirror of the Boltz-2 structure- and affinity-prediction weights

Active04 months ago

Access to Biological Web Services from Python.

Active3474 months ago
Python
NOASSERTION

protein-protein-interactions network graph. 'GOAT' reference: Frank Koopmans (2024) <doi:10.1038/s42003-024-06454-5

Active54 months ago
R
Apache-2.0+

PRISM is an antibody language model that jointly predicts amino

Active04 months ago

JAX/Equinox parameters for Promera, a dual-purpose biomolecular generative model

Active05 months ago

AMPSeek is a workflow designed to predict the antimicrobial activity

Active35 months ago
Python

protein relations as adjacency matrices and connected components, visualise these

Active65 months ago
R
Artistic-2.0

Computes weighed laboratory buffer recipes from target pH, concentration, and

Active25 months ago
Python

protein annotations and mappings between proteins and their encoding transcripts

Active365 months ago
R
LGPL

protein sequences, 236 million protein structures, and 539 million proteins

Active2K5 months ago
Python

This model card provides an overview of the intended use

Active05 months ago
Python

This model card provides an overview of the intended use

Active10K5 months ago
Python

This set of model weights was released with the GitHub

Active1.1K5 months ago
Python

protein language model for protein sequence generation. It is the smallest

Active2.6K5 months ago
Python

protein language model for protein sequence generation. It is the largest

Active995 months ago
Python

proteins via backpropagation through compositional design constraints parameterized by structure

Active945 months ago
Python
MIT

This repository hosts release artifacts for ReCLIP:

Active05 months ago

Interactive R package with an intuitive Shiny-based graphical interface

Active375 months ago
R
MIT

!Protein-ligand interaction header

Active65 months ago
Python

First fully open-source model achieving AlphaFold3-level accuracy with

Active4.3K5 months ago
Python
MIT

First architecture deeply integrating a DNA foundation model with an

Active4065 months ago
Jupyter Notebook
Apache-2.0

Decentralized self-organizing teams of AI agents for long-running

Active7635 months ago
Python

This set of model weights was released with the GitHub

Active6.2K5 months ago
Python

Fit linear models to overdispersed count data. The package can

Active1265 months ago
R
GPL-3.0

CGAS is an automated Python-based pipeline providing a comprehensive

Active115 months ago
Python
MIT

650M, layer 33) for interpretability research on protein language models.

Active185 months ago

protein sequences and 3D structures, conditioned on and co-folded

Active05 months ago