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A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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758 of 7,765 resources matching “protein”
Showing 251–300
trillionlabs/Gravity-bio-16B-A3B
by trillionlabsGravity-bio-16B-A3B is a biology-focus midtrained model
inflammatory-aging-clock/somascan-85
by inflammatory-aging-clockprotein aging clock that predicts chronological age from 85 unique
inflammatory-aging-clock/olink-inflammation-92
by inflammatory-aging-clockprotein aging clock that predicts chronological age from 92 Olink
proteins, antibodies, small molecules, chemical reactions, materials, and their spatial
fairydance/molexar-10m-base
by fairydanceMolexar-10M Base is the unconditional base model for Molexar
fairydance/molexar-10m-omni
by fairydanceMolexar-10M Omni is the universal multi-condition model for
protein target sequences. The mirnaprotpred package provides two core modules
Protein Language Models (PLMs). It uses trainable subnetworks to isolate
nvidia/NV-KERMT-70M-v2
by nvidia> Source code, training scripts, and inference utilities for this
both molecules and proteins within a single decoder-only architecture.
PengJiaMa123/RAMER
by PengJiaMa123This Hugging Face repository stores the official resources for RAMER
promptable and aligned protein language models for protein sequence generation.
Babajaan/KAU-BioMedLLM
by BabajaanKAU-BioMedLLM is a research prototype for source-grounded biomedical
GraphExperiment provides users and developers with an S4 class that
Cross-platform system optimizations for accelerating AlphaFold3 training with 1.73
CAPHEINE is a comprehensive computational workflow that automates exploratory evolutionary
Learning the language of protein-protein interactions
protein structure determination from electron density with high accuracy (3DEM/EMBL
protein from a single anchor input, with optional sequence-specific
moritztng/boltz-2
by moritztngMirror of the Boltz-2 structure- and affinity-prediction weights
Access to Biological Web Services from Python.
protein-protein-interactions network graph. 'GOAT' reference: Frank Koopmans (2024) <doi:10.1038/s42003-024-06454-5
RomeroLab-Duke/prism-antibody
by RomeroLab-DukePRISM is an antibody language model that jointly predicts amino
escalante-bio/jpromera
by escalante-bioJAX/Equinox parameters for Promera, a dual-purpose biomolecular generative model
AMPSeek is a workflow designed to predict the antimicrobial activity
protein relations as adjacency matrices and connected components, visualise these
Computes weighed laboratory buffer recipes from target pH, concentration, and
protein annotations and mappings between proteins and their encoding transcripts
biohub/esm3-sm-open-v1
by biohubprotein sequences, 236 million protein structures, and 539 million proteins
This model card provides an overview of the intended use
This model card provides an overview of the intended use
biohub/esmc-600m-2024-12
by biohubThis set of model weights was released with the GitHub
protein language model for protein sequence generation. It is the smallest
protein language model for protein sequence generation. It is the largest
proteins via backpropagation through compositional design constraints parameterized by structure
Interactive R package with an intuitive Shiny-based graphical interface
poolside-laguna-hackathon/protein-ligand-design
by poolside-laguna-hackathon!Protein-ligand interaction header
First fully open-source model achieving AlphaFold3-level accuracy with
First architecture deeply integrating a DNA foundation model with an
Decentralized self-organizing teams of AI agents for long-running
biohub/esmc-300m-2024-12
by biohubThis set of model weights was released with the GitHub
Fit linear models to overdispersed count data. The package can
CGAS is an automated Python-based pipeline providing a comprehensive
aasatorres/esm2-sae-topk-16384-k512
by aasatorres650M, layer 33) for interpretability research on protein language models.
DISCO-Design/DISCO
by DISCO-Designprotein sequences and 3D structures, conditioned on and co-folded