Find open-source science resources

A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.

2,558 of 7,078 resources

Showing 201–250

A controlled vocabulary for education levels, such as primary eduation, secondary education, and post-secondary education

Stale02 years ago

This is a vocabulary for educational sectors as used in the OER World Map (https://oerworldmap.org)

Stale42 years ago
Stale142 years ago
CC-BY-4.0

This SKOS vocabulary describes types of primary and secondary schools in Germany, such as Grundschule, Gymnasium, and Realschule. This does not include post-secondary education such as universities or hochschulen.

Stale12 years ago
CC0-1.0
Stale332 years ago
CSS
MIT
Archived762 years ago
Shell
Apache-2.0

This is a code repository for the SIB - Swiss Institute of Bioinformatics CALIPHO group neXtProt project, which is a comprehensive human-centric discovery platform, that offers a integration of and navigation through protein-related data. CALIPHO is an interdisciplinary team which aims to use a variety of methodologies to help uncover the function of uncharacterized human proteins.

Stale23 years ago

The covid-19 epidemiology and monitoring ontology (cemo) provides a common ontological model to make epidemiological quantitative data for monitoring the covid-19 outbreak machine-readable and interoperable to facilitate its exchange, integration and analysis, to eventually support evidence-based rapid response.

Stale83 years ago
TeX
CC0-1.0

The Science Data Discovery Ontology (sddo) is being developed to provide a semantic foundation for the discovery of information managed by NASA's Science Mission Directorate. This information spans many scientific disciplines, fields and subfields, including heliophysics, earth science, planetary science, astrophysics, biology, astrobiology, and physical science. [from repository]

Stale23 years ago
Python
Stale33 years ago
Makefile
Stale794 years ago
Jupyter Notebook
MIT
Stale704 years ago
Makefile
NOASSERTION
Stale04 years ago
HTML

A vocabulary of university course subjects

Stale34 years ago
Stale34 years ago

Algorithm Metadata Vocabulary is a vocabulary for capturing and storing the metadata about the algorithms (a procedure or a set of rules that is followed step-by-step to solve a problem, especially by a computer). There are uncountable algorithms present in every area (e.g., Computer Science, Mathematics), which makes it hard for specialists, academicians, application engineers, and so forth to discover, distinguish, select, and reuse them. [from repository]

Stale04 years ago
Python
CC0-1.0
Stale54 years ago
Shell
CC0-1.0

An ontology transcription of definitions in the Functional Mock-up Interface (FMI) standard document from https://fmi-standard.org/ that enables representing Functional Mock-up Units (FMUs) in RDF

Stale24 years ago
Python

An ontology to support disciplinary annotation of Arctic Data Center datasets.

Stale14 years ago
R

An ontology encoding the Common Information Model (CIM) schema

Stale85 years ago
Apache-2.0

An educational ontology for personalised recommendation learning systems that is based on learning path and user profile. It represents the key components for a personalised learning system based on our requirement analysis.

Stale165 years ago
HTML
CC0-1.0
Stale05 years ago
NOASSERTION
Stale685 years ago
HTML

A small ontology expressing skills and competencies.

Stale05 years ago
CC-BY-4.0

This proposed vocabulary allows edges in Property Graphs (e.g Neo4j, RDF*) to be augmented with edge properties that specify ontological semantics, including (but not limited) to OWL-DL interpretations. [from GitHub]

Stale355 years ago
Makefile
NOASSERTION
Stale05 years ago
Stale05 years ago

SWAN ontology consists in a collection of ontologies used to create, manage and share scientific knowledge bases.

Stale36 years ago
Apache-2.0
Stale686 years ago
Makefile

This ontology is designed to support data search, retrieval and information identification in the EJP-RD catalogs which covers the registries and biobanks for rare diseases. (from repository)

Stale46 years ago
Makefile

The Reagent Ontology (ReO) adheres to OBO Foundry principles (obofoundry.org) to model the domain of biomedical research reagents, considered broadly to include materials applied “chemically” in scientific techniques to facilitate generation of data and research materials. ReO is a modular ontology that re-uses existing ontologies to facilitate cross-domain interoperability. It consists of reagents and their properties, linking diverse biological and experimental entities to which they are related. ReO supports community use cases by providing a flexible, extensible, and deeply integrated framework that can be adapted and extended with more specific modeling to meet application needs.

Stale06 years ago
Python
NOASSERTION

The Semantic Resource Types Vocabulary was created for NSF's EarthCube Program's Resource Repository. Includes entries for things like 'thesaurus', 'ontology', 'controlled vocabulary', 'taxonomy'.

Stale06 years ago

This ontology defines a taxonomy of software functions based on the work of the NSF-funded EarthCube Resource Registry working group. The functions are generally organized by their role in the research process.

Stale06 years ago
HTML

The Data Model Language Controlled Vocabulary was created for NSF's EarthCube Program's Resource Registry. At this point it merely lists a few of the languages used by data model resources in the registry.

Stale06 years ago

The Audience Types Controlled Vocabulary was created for NSF's EarthCube program's Resource Registry. The vocabulary defines the types of audience each resource in the program is targeted to. At this point the vocabulary is very bare - no term definitions even; however, the intention is to extend the vocabulary over time. If you would like to assist with this or in extending any of the other controlled vocabularies/ontologies developed as part of the Resource Registry project, please see https://github.com/earthcubearchitecture-ecresourcereg.

Stale06 years ago

This mini-ontology contains classes and instances for each version of the licenses that are commonly used in software projects, particularly open source software projects. The URI's for each are the canonical URI's for that license (where they exist).

Stale06 years ago
HTML

The Extensible Observation Ontology (OBOE) is a formal ontology for capturing the semantics of scientific observation and measurement. The ontology supports researchers to add detailed semantic annotations to scientific data, thereby clarifying the inherent meaning of scientific observations.

Stale337 years ago
XSLT

An OWL 2 DL ontology developed for creating sets, bags and lists of resources, and for inferring collection properties even in the presence of incomplete information.

Stale147 years ago
HTML

An ontology for describing the administrative information of research projects, e.g., grant applications, funding bodies, project partners, etc.

Stale37 years ago

An ontology for the characterisation of the roles of agents – people, corporate bodies and computational agents in the publication process. These agents can be, e.g. authors, editors, reviewers, publishers or librarians.

Stale17 years ago

TogoID is an ID conversion service implementing unique features with an intuitive web interface and an API for programmatic access. TogoID supports datasets from various biological categories such as gene, protein, chemical compound, pathway, disease, etc. TogoID users can perform exploratory multistep conversions to find a path among IDs. To guide the interpretation of biological meanings in the conversions, we crafted an ontology that defines the semantics of the dataset relations. (from https://togoid.dbcls.jp/)

Stale27 years ago
HTML

The Shape Expressions (ShEx) language describes RDF nodes and graph structures. A node constraint describes an RDF node (IRI, blank node or literal) and a shape describes the triples involving nodes in an RDF graph. These descriptions identify predicates and their associated cardinalities and datatypes. ShEx shapes can be used to communicate data structures associated with some process or interface, generate or validate data, or drive user interfaces.

Stale17 years ago
HTML

An ontology that enables the description of reviews of scientific articles and other scholarly resources.

Stale08 years ago
Stale98 years ago
CC-BY-4.0