Find open-source science resources
A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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2,558 of 7,078 resources
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This is a vocabulary collection utilized by XHTML Family modules and document types using XHTML Modularization, including XHTML Role and XHTML + RDFa as defined in rdfa-syntax. The XHTML specifications are developed by the W3C XHTML 2 Working Group as part of the W3C HTML Activity. [from homepage]
Metabolites in the Xenobiotics Metabolism Database.
The Extensible Markup Language (XML) is a subset of SGML that is completely described in this document. Its goal is to enable generic SGML to be served, received, and processed on the Web in the way that is now possible with HTML. XML has been designed for ease of implementation and for interoperability with both SGML and HTML.
This document describes the XML Schema namespace. It also contains a directory of links to these related resources, using Resource Directory Description Language.
The Yeast Metabolome Database (YMDB) is a manually curated database of small molecule metabolites found in or produced by Saccharomyces cerevisiae (also known as Baker’s yeast and Brewer’s yeast).
This service fills a gap between services like prefix.cc and LOV or looking up the original vocabulary specification. Not all vocabularies (or schema or ontology, whatever you want to call them) provide an HTML view. If you resolve some of the common prefixes all you get back is some RDF serialization which is not ideal. (from <https://prefix.zazuko.com/about>)
Der Thesaurus enthält Vokabular zu allen ökonomischen Themenstellungen: über 6.000 Schlagwörter und über 28.000 zusätzliche Synonyme als Zugangshilfe, um individuelle Formulierungen bei der Suche aufzufangen. Auch Fachbegriffe aus benachbarten Bereichen wie z.B. Recht, Soziologie oder Politik sowie Geobegriffe sind dort zu finden. Wenn Sie Schlagwörter aus diesem Vokabular auswählen, können Sie sicher sein Treffer zu erhalten, die zu dem gewünschten Sachgebiet passen. [from homepage]
Zenodo is an open repository that allows researchers to deposit research papers, data sets, research software, reports, and any other research related digital artefacts.
AberOWL is a framework for ontology-based access to biological data. It consists of a repository of bio-ontologies, a set of webservices which provide access to OWL(-EL) reasoning over the ontologies, and several frontends which utilise the ontology repository and reasoning services to provide access to specific biological datasets.
A vocabulary service based on SKOSMOS provided by ACDH-CH Austrian Centre for Digital Humanities and Cultural Heritage, e.g., for the DARIAH-EU project.
A vocabulary and ontology repository for agronomy and related domains.
Atom is an XML-based document format that describes lists of related information known as "feeds". Feeds are composed of a number of items, known as "entries", each with an extensible set of attached metadata. For example, each entry has a title. (from homepage)
The BiodivPortal is an OntoPortal instance for biodiversity-related ontologies
This ontology contains terms for defining a context-free grammar. The basic property is mustBeOneSequence which is equivalent to the expression of a production in the original simple BNF. Rules can be used to convert into and out of shorthand forms such as optional, repeating and token-separated list forms. Terminals are described either as a string, which is represented by itself, or are defined by a regular expression using cfg:matches.
The Annotea Bookmark Schema, describing properties used to define instances of bookmarks, topics, and shortcuts.
This ontology is an OWL profile of the IEC Common Information Model for Smart Grids, developed by the Cerise-SG project. This profile extends the cim-smartgrid profile previously created by Maarten Steen (available at http://ns.cerise-project.nl/energy/def/cim-smartgrid) with the classes Register and Channel. This OWL profile was generated from the UML version of the IEC Common Information Model using the CIMTool (from ontology)
The Crop Ontology (CO) current objective is to compile validated concepts along with their inter-relationships on anatomy, structure and phenotype of Crops, on trait measurement and methods as well as on Germplasm with the multi-crop passport terms
A SKOSMOS server for the French School for Advanced Studies in the Social Sciences (EHSSS)
n international group of clinicians working in the field of dysmorphology has initiated the standardization of terms used to describe human morphology. The goals are to standardize these terms and reach consensus regarding their definitions. In this way, we will increase the utility of descriptions of the human phenotype and facilitate reliable comparisons of findings among patients. Discussions with other workers in dysmorphology and related fields, such as developmental biology and molecular genetics, will become more precise. [from homepage]