Find open-source science resources
A directory of tools, AI models, datasets, and research resources for biotech, bioinformatics, and other scientific fields. Aggregated from curated GitHub awesome-lists, HuggingFace, bio.tools, Bioconductor, and more.
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2,419 of 6,573 resources
Showing 1,551–1,600
A hierarchical classifications of subjects in mathematics
The Molecular Signatures Database (MSigDB) is a collection of annotated gene sets for use with GSEA software. From this web site, you can
The Unified Medical Language System® (UMLS®) Metathesaurus (MTH) was developed and is maintained by the U.S. National Library of Medicine (NLM). MTH contains concept names, attributes, relationships, and other data that were created by NLM to facilitate construction of the UMLS Metathesaurus.
MultiCellDS is data standard for multicellular simulation, experimental, and clinical data. A digital cell line is a hierarchical organization of quantitative phenotype data for a single biological cell line, including the microenvironmental context of the measurements and essential metadata.
The CDC's National Center for Immunization and Respiratory Diseases ([NCIRD](https://www.cdc.gov/ncird/)) developed and maintains HL7 Table 0227, Manufacturers of Vaccines (MVX). It includes both active and inactive manufacturers of vaccines in the US. Inactive MVX codes allow transmission of historical immunization records. When [MVX code is paired with a CVX code](https://www2a.cdc.gov/vaccines/iis/iisstandards/vaccines.asp?rpt=tradename) (vaccine administered code), the specific trade named vaccine may be indicated.
The Human Metabolome Gene/Protein Database (MGP) of metabolome-related genes and proteins contains data for over 7300 genes and over 15,500 proteins. [from homepage]
The main objective of RefMet is to provide a standardized reference nomenclature for both discrete metabolite structures and metabolite species identified by spectroscopic techniques in metabolomics experiments. [from homepage]
The Metabolomics Workbench Metabolite Database contains structures and annotations of biologically relevant metabolites. As of 03/23/26, the database contains 175556 entries, collected from various public sources. [from homepage]
Mycobrowser is a resource that provides both in silico generated and manually reviewed information within databases dedicated to the complete genomes of Mycobacterium tuberculosis, Mycobacterium leprae, Mycobacterium marinum and Mycobacterium smegmatis. This collection references Mycobacteria leprae information.
An ARK resolver as well as resolver built with common prefixes as in Identifiers.org
The nomenclature used for named reactions in text mining software from NextMove. While it's proprietary, there are a few publications listing parts. 487/1,855 have mappings to the Reaction Ontology (RXNO).
Identifiers for biospecimens used in experiments that investigate biological and health responses of terrestrial life to spaceflight
Identifiers for space-related data from experiments that investigate biological and health responses of terrestrial life to spaceflight
Identifiers for hardware used in experiments that investigate biological and health responses of terrestrial life to spaceflight
Identifiers for missions associated with experiments that investigate biological and health responses of terrestrial life to spaceflight
Identifiers for payloads associated with experiments that investigate biological and health responses of terrestrial life to spaceflight
Identifiers for space-related data from studies that investigate biological and health responses of terrestrial life to spaceflight
Identifiers for subjects of experiments that investigate biological and health responses of terrestrial life to spaceflight
The NCATS BioPlanet is a comprehensive, publicly accessible informatics resource that catalogs all pathways, their healthy and disease state annotations, and targets within and relationships among them. The BioPlanet integrates pathway annotations from publicly available, manually curated sources subjected to thorough redundancy and consistency cross-evaluation via extensive manual curation. The browser supports interactive browsing, retrieval and analysis of pathways, exploration of pathway connections, and pathway search by gene targets, category, and availability of bioactivity assays.
The National Center for Advancing Translational Sciences](http://www.ncats.nih.gov/) (NCATS) has developed Inxight Drugs as a comprehensive portal for drug development information. NCATS Inxight Drugs contains information on ingredients in medicinal products, including: - US Approved Drugs - Marketed Drugs - Investigational Drugs - Other Substances
Genetic code, mitochontrial genetic code, and other linked information to NCBI taxonomy entries.
This resource organizes information on genomes including sequences, maps, chromosomes, assemblies, and annotations.
A database-specific registry supporting curation in the NCBI GenBank and related NCBI resources
The NCBI Bookshelf provides free online access to books and documents in life science and healthcare. Search, read, and discover.